EVA: Detailed information for proteins added on: 2000_10_04

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_10_04	1fnn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: CELL DIVISION CONTROL PROTEIN 6; CHAIN: A, B; SYNONYM: CDC6P; ENGINEERED: YES	PYROBACULUM AEROPHILUM; ARCHAEBACTERIA;	J.LIU,C.L.SMITH,D.DERYCKERE,K.DEANGELIS,G.S.MARTIN, J.M.BERGER	1fnn	2000_10_04
2000_10_04	1fho	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: UNC-89; CHAIN: A; FRAGMENT: PLECKSTRIN HOMOLOGY (PH) DOMAIN; ENGINEERED: YES	CAENORHABDITIS ELEGANS; NEMATODE;	N.BLOMBERG,E.BARALDI,M.SATTLER,M.SARASTE,M.NILGES	1fho	2000_10_04
2000_10_04	1fwq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	METAL BINDING PROTEIN	MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR; CHAIN: A; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGAN: BRAIN;	H.YU,S.L.SCHREIBER	1fwq	2000_10_04
2000_10_04	1fu9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: U-SHAPED TRANSCRIPTIONAL COFACTOR; CHAIN: A; FRAGMENT: NINTH ZINC-FINGER DOMAIN; ENGINEERED: YES	DROSOPHILA MELANOGASTER; FRUIT FLY;	C.K.LIEW,K.KOWALSKI,A.H.FOX,A.NEWTON,B.K.SHARPE,M.CROSSLEY, J.P.MACKAY	1fu9	2000_10_04
2000_10_04	1fq0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: KDPG ALDOLASE; CHAIN: A, B, C; EC: 4.1.2.14; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	J.H.NAISMITH	1fq0	2000_10_04
2000_10_04	1gd2	E	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/DNA	MOLECULE: DNA (5'-D(APGPGPTPTPAPCPGPTPAPAPCP*C) -3'); CHAIN: A, B, C, D; ENGINEERED: YES; MOLECULE: TRANSCRIPTION FACTOR PAP1; CHAIN: E, F, G, H, I, J; FRAGMENT: LEUCINE ZIPPER DOMAIN; SYNONYM: AP-1-LIKE TRANSCRIPTION FACTOR; ENGINEERED: YES	SYNTHETIC: YES; SCHIZOSACCHAROMYCES POMBE; FISSION YEAST;	Y.FUJII,T.SHIMIZU,T.TODA,M.YANAGIDA,T.HAKOSHIMA	1gd2	2000_10_04
2000_10_04	1ei5	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: D-AMINOPEPTIDASE; CHAIN: A; SYNONYM: DAP; EC: 3.4.11.19; ENGINEERED: YES	OCHROBACTRUM ANTHROPI; BACTERIA; STRAIN: SCRC C1-38;	C.BOMPARD-GILLES,H.REMAUT,V.VILLERET,T.PRANGE,L.FANUEL, J.JORIS,J.-M.FRERE,J.VAN BEEUMEN	1ei5	2000_10_04
2000_10_04	1c4r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: NEUREXIN-I BETA; CHAIN: A, B, C, D, E, F, G, H; FRAGMENT: EXTRACELLULAR DOMAIN; ENGINEERED: YES	RATTUS NORVEGICUS; RAT;	G.RUDENKO,T.NGUYEN,Y.CHELLIAH,T.C.SUDHOF,J.DEISENHOFER	1c4r	2000_10_04
2000_10_04	1fiq	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: XANTHINE OXIDASE; CHAIN: A; FRAGMENT: RESIDUES 1-219; SYNONYM: XO; EC: 1.1.3.22; MOLECULE: XANTHINE OXIDASE; CHAIN: B; FRAGMENT: RESIDUES 220-569; SYNONYM: XO; EC: 1.1.3.22; MOLECULE: XANTHINE OXIDASE; CHAIN: C; FRAGMENT: RESIDUES 570-1332; SYNONYM: XO; EC: 1.1.3.22	BOS TAURUS; BOVINE; SECRETION: MILK; BOS TAURUS; BOVINE; SECRETION: MILK; BOS TAURUS; BOVINE; SECRETION: MILK	C.ENROTH,B.T.EGER,K.OKAMOTO,T.NISHINO,T.NISHINO,E.F.PAI	1fiq	2000_10_04

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field