EVA: Detailed information for proteins added on: 2000_10_17

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_10_17	1f6u	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN/RNA	MOLECULE: HIV-1 NUCLEOCAPSID PROTEIN; CHAIN: A; ENGINEERED: YES; MOLECULE: HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING; CHAIN: B; ENGINEERED: YES	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; HIV-1; SYNTHETIC: YES	G.K.AMARASINGHE,R.N.DE GUZMAN,R.B.TURNER,K.J.CHANCELLOR, M.F.SUMMERS	1f6u	2000_10_17
2000_10_17	1f3u	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT; CHAIN: A, C, E, G; FRAGMENT: RESIDUES 2-119; SYNONYM: TRANSCRIPTION INITIATION FACTOR RAP30; ENGINEERED: YES; MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT; CHAIN: B, D, F, H; FRAGMENT: RESIDUES 2-172; SYNONYM: TRANSCRIPTION INITIATION FACTOR RAP74; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	F.GAISER,S.TAN,T.J.RICHMOND	1f3u	2000_10_17
2000_10_17	1fio	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: SSO1 PROTEIN; CHAIN: A; FRAGMENT: CYTOPLASMIC DOMAIN; ENGINEERED: YES; OTHER_DETAILS: YEAST T-SNARE PROTEIN	SACCHAROMYCES CEREVISIAE; YEAST;	M.MUNSON,X.CHEN,A.E.COCINA,S.M.SCHULTZ,F.M.HUGHSON	1fio	2000_10_17
2000_10_17	1ft9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: CARBON MONOXIDE OXIDATION SYSTEM TRANSCRIPTION REGULATOR; CHAIN: A, B; SYNONYM: COOA GENE PRODUCT; ENGINEERED: YES	RHODOSPIRILLUM RUBRUM; BACTERIA;	W.N.LANZILOTTA,D.J.SCHULLER,T.L.POULOS,M.V.THORSTEINSSON, B.KIRBY,G.P.ROBERTS	1ft9	2000_10_17
2000_10_17	1eje	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGAND BINDING PROTEIN	MOLECULE: FMN-BINDING PROTEIN; CHAIN: A; ENGINEERED: YES	METHANOBACTERIUM THERMOAUTOTROPHICUM;	D.CHRISTENDAT,V.SARIDAKIS,A.BOCHKAREV,C.ARROWSMITH, A.M.EDWARDS	1eje	2000_10_17
2000_10_17	1f3u	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT; CHAIN: A, C, E, G; FRAGMENT: RESIDUES 2-119; SYNONYM: TRANSCRIPTION INITIATION FACTOR RAP30; ENGINEERED: YES; MOLECULE: TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT; CHAIN: B, D, F, H; FRAGMENT: RESIDUES 2-172; SYNONYM: TRANSCRIPTION INITIATION FACTOR RAP74; ENGINEERED: YES	HOMO SAPIENS; HUMAN; HOMO SAPIENS; HUMAN;	F.GAISER,S.TAN,T.J.RICHMOND	1f3u	2000_10_17

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field