EVA: Detailed information for proteins added on: 2000_10_28

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_10_28	1f81	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: CREB-BINDING PROTEIN; CHAIN: A; FRAGMENT: TAZ2 DOMAIN (1764-1850); ENGINEERED: YES	MUS MUSCULUS; RABBIT;	R.N.DE GUZMAN,H.L.LIU,M.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT	1f81	2000_10_28
2000_10_28	1fl4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: CGMP-SPECIFIC 3'-5'-CYCLIC PHOSPHODIESTERASE; CHAIN: A; SYNONYM: CGB-PDE, CGMP-BINDING CGMP-SPECIFIC PHOSPHODIESTERASE; EC: 3.1.4.17	BOS TAURUS; BOVINE	Y.-S.J.HO,L.M.BURDEN,J.H.HURLEY	1fl4	2000_10_28
2000_10_28	1fft	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: UBIQUINOL OXIDASE; CHAIN: A, F; EC: 1.10.3.-; ENGINEERED: YES; MOLECULE: UBIQUINOL OXIDASE; CHAIN: B, G; EC: 1.10.3.-; ENGINEERED: YES; MOLECULE: UBIQUINOL OXIDASE; CHAIN: C, H; EC: 1.10.3.-; ENGINEERED: YES; MOLECULE: UBIQUINOL OXIDASE; CHAIN: D, I; EC: 1.10.3.-; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA;	J.ABRAMSON,S.RIISTAMA,G.LARSSON,A.JASAITIS,M.SVENSSON-EK, A.PUUSTINEN,S.IWATA,M.WIKSTROM	1fft	2000_10_28
2000_10_28	1fxj	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; CHAIN: A, B; FRAGMENT: TRUNCATED FORM AFTER ARG331; SYNONYM: N-ACETYLGLUCOSAMINE 1-PHOSPHATE URIDYLTRANSFERASE; EC: 2.7.7.23; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; CELLULAR_LOCATION: CYTOPLASM;	K.BROWN,F.POMPEO,S.DIXON,D.MENGIN-LECREULX,C.CAMBILLAU, Y.BOURNE	1fxj	2000_10_28
2000_10_28	1fqy	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: AQUAPORIN-1; CHAIN: A; SYNONYM: AQP1	HOMO SAPIENS; HUMAN; CELL: ERYTHROCYTE	K.MURATA,K.MITSUOKA,T.HIRAI,T.WALZ,P.AGRE,J.B.HEYMANN, A.ENGEL,Y.FUJIYOSHI	1fqy	2000_10_28
2000_10_28	1d7b	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: CELLOBIOSE DEHYDROGENASE; CHAIN: A, B; FRAGMENT: CYTOCHROME TYPE B DOMAIN; SYNONYM: CELLOBIOSE OXIDASE; EC: 1.1.3.25	PHANEROCHAETE CHRYSOSPORIUM; FUNGUS; TISSUE: SECRETED	B.M.HALLBERG,T.BERGFORS,K.BACKBRO,C.DIVNE	1d7b	2000_10_28
2000_10_28	1d6m	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: DNA TOPOISOMERASE III; CHAIN: A; EC: 5.99.1.2; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	A.MONDRAGON,R.DIGATE	1d6m	2000_10_28
2000_10_28	1dl6	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	MOLECULE: TRANSCRIPTION FACTOR II B (TFIIB); CHAIN: A; FRAGMENT: N-TERMINAL DOMAIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	H.-T.CHEN,P.LEGAULT,J.GLUSHKA,J.G.OMICHINSKI,R.A.SCOTT	1dl6	2000_10_28
2000_10_28	1e68	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	BACTERIOCINS	MOLECULE: BACTERIOCIN AS-48; CHAIN: A; FRAGMENT: BACTERIOCIN AS-48 RESIDUE 36-105; OTHER_DETAILS: PEPTIDE LINK BETWEEN RESIDUES 1 AND 70	ENTEROCOCCUS FAECALIS; PLASMID: PMB2	C.GONZALEZ,G.LANGDON,M.BRUIX,A.GALVEZ,E.VALDIVIA, M.MAQUEDA,M.RICO	1e68	2000_10_28
2000_10_28	1eg2	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: MODIFICATION METHYLASE RSRI; CHAIN: A; SYNONYM: ADENINE-SPECIFIC METHYLTRANSFERASE RSRI, M.RSRI; EC: 2.1.1.72; ENGINEERED: YES	RHODOBACTER SPHAEROIDES; BACTERIA;	R.D.SCAVETTA,C.B.THOMAS,M.WALSH,S.SZEGEDI,A.JOACHIMIAK, R.I.GUMPORT,M.E.A.CHURCHILL	1eg2	2000_10_28
2000_10_28	1ezf	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE; CHAIN: A, B, C; FRAGMENT: RESIDUES 31-370; SYNONYM: SQUALENE SYNTHETASE; EC: 2.5.1.21; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN;	J.PANDIT,D.E.DANLEY,G.K.SCHULTE,S.M.MAZZALUPO,T.A.PAULY, C.M.HAYWARD,E.S.HAMANAKA,J.F.THOMPSON,H.J.HARWOOD	1ezf	2000_10_28
2000_10_28	1ewq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION/DNA	MOLECULE: DNA MISMATCH REPAIR PROTEIN MUTS; CHAIN: A, B; SYNONYM: TAQ MUTS SUBUNIT A; ENGINEERED: YES; MOLECULE: DNA (5'- D(GPCPGPAPCPGPCPTPAPGPCPGPTPGPCPGPGPCPTP CPGPTPC)-3'); CHAIN: C; ENGINEERED: YES; MOLECULE: DNA (5'- D(GPGPAPCPGPAPGPCPCPGPCPCPGPCPTPAPGPCPGP TPCP*G)-3'); CHAIN: D; ENGINEERED: YES	THERMUS AQUATICUS; BACTERIA; SYNTHETIC: YES; SYNTHETIC: YES	G.OBMOLOVA,C.BAN,P.HSIEH,W.YANG	1ewq	2000_10_28
2000_10_28	1ev7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: TYPE IIE RESTRICTION ENDONUCLEASE NAEI; CHAIN: A, B; EC: 3.1.21.4; ENGINEERED: YES	NOCARDIA AEROCOLONIGENES; BACTERIA;	Q.HUAI,J.D.COLANDENE,Y.CHEN,F.LUO,Y.ZHAO	1ev7	2000_10_28
2000_10_28	1e4f	T	pdb_ascii	dssp	fasta	psi_ascii	psi_html	BACTERIAL CELL DIVISION	MOLECULE: CELL DIVISION PROTEIN FTSA; CHAIN: T; ENGINEERED: YES	THERMOTOGA MARITIMA; DSM: 3109; PLASMID: PFE29; GENE: FTSA;	F.VAN DEN ENT,J.LOWE	1e4f	2000_10_28
2000_10_28	1qnr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ENDO-1,4-B-D-MANNANASE; CHAIN: A; FRAGMENT: CATALYTIC DOMAIN; EC: 3.2.1.78; ENGINEERED: YES	TRICHODERMA REESEI; STRAIN: ALKO4330;	E.SABINI,H.SCHUBERT,G.MURSHUDOV,K.S.WILSON,M.SIIKA-AHO, M.PENTTILA	1qnr	2000_10_28
2000_10_28	1qmu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CARBOXYPEPTIDASE	MOLECULE: CARBOXYPEPTIDASE GP180 RESIDUES 503-882; CHAIN: A; FRAGMENT: YES; ENGINEERED: YES	LOPHONETTA SPECULARIOIDES; CRESTED DUCK; ORGAN: LIVER; OTHER_DETAILS: OBTAINED AFTER CLONING INTO AND	F.X.GOMIS-RUETH,M.COLL,F.X.AVILES,J.VENDRELL,L.D.FRICKER	1qmu	2000_10_28
2000_10_28	1qmy	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PROTEASE; SYNONYM: LEADER PROTEASE; CHAIN: A, B, C; ENGINEERED: YES; MUTATION: YES	APHTHOVIRUS O; FOOT-AND-MOUTH DISEASE VIRUS, FMDV; STRAIN: O1K;	A.GUARNE,J.TORMO,W.GLASER,T.SKERN,I.FITA	1qmy	2000_10_28

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field