EVA: Detailed information for proteins added on: 2000_11_15

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

 

date id chains PDB ASCII DSSP ASCII FASTA ASCII PSI-Blast ASCII PSI-Blast HTML PDB header PDB compnd PDB source PDB author id date
2000_11_151f6v Apdb_asciidssp fasta psi_asciipsi_html DNA BINDING PROTEINMOLECULE: DNA TRANSPOSITION PROTEIN; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN; SYNONYM: MU B TRANSPOSITION PROTEIN; ENGINEERED: YESBACTERIOPHAGE MU; BACTERIOPHAGE;L-H HUNG,G.CHACONAS,G.S.SHAW1f6v 2000_11_15
2000_11_151f5m Apdb_asciidssp fasta psi_asciipsi_html SIGNALING PROTEINMOLECULE: GAF; CHAIN: A, B; ENGINEERED: YESSACCHAROMYCES CEREVISIAE; YEAST;Y.S.HO,L.M.BURDEN,J.H.HURLEY1f5m 2000_11_15
2000_11_151fo1 Apdb_asciidssp fasta psi_asciipsi_html RNA BINDING PROTEINMOLECULE: NUCLEAR RNA EXPORT FACTOR 1; CHAIN: A, B; FRAGMENT: RNA-BINDING DOMAIN; SYNONYM: TAP (NFX1); ENGINEERED: YESHOMO SAPIENS; HUMAN;E.LIKER,E.FERNANDEZ,E.IZAURRALDE,E.CONTI1fo1 2000_11_15
2000_11_151ff9 Apdb_asciidssp fasta psi_asciipsi_html OXIDOREDUCTASEMOLECULE: SACCHAROPINE REDUCTASE; CHAIN: A; EC: 1.5.1.7; ENGINEERED: YESMAGNAPORTHE GRISEA; RICE BLAST FUNGUS;E.JOHANSSON,J.J.STEFFENS,Y.LINDQVIST,G.SCHNEIDER1ff9 2000_11_15
2000_11_151fc3 Apdb_asciidssp fasta psi_asciipsi_html SIGNALING PROTEINMOLECULE: SPO0A; CHAIN: A, B, C; FRAGMENT: C-TERMINAL DOMAIN; SYNONYM: SPORULATION RESPONSE REGULATOR; ENGINEERED: YESBACILLUS STEAROTHERMOPHILUS; BACTERIA;R.J.LEWIS,S.KRZYWDA,A.J.WILKINSON1fc3 2000_11_15
2000_11_151fvg Apdb_asciidssp fasta psi_asciipsi_html OXIDOREDUCTASEMOLECULE: PEPTIDE METHIONINE SULFOXIDE REDUCTASE; CHAIN: A; EC: 1.8.4.6; ENGINEERED: YES; OTHER_DETAILS: DITHIOTHREITOL COMPLEXBOS TAURUS; BOVINE;W.T.LOWTHER,N.BROT,H.WEISSBACH,B.W.MATTHEWS1fvg 2000_11_15
2000_11_151dk4 Apdb_asciidssp fasta psi_asciipsi_html HYDROLASEMOLECULE: INOSITOL MONOPHOSPHATASE; CHAIN: A, B; EC: 3.1.3.25; ENGINEERED: YESMETHANOCOCCUS JANNASCHII;B.STEC,H.YANG,K.A.JOHNSON,L.CHEN,M.F.ROBERTS1dk4 2000_11_15
2000_11_151dd3 Cpdb_asciidssp fasta psi_asciipsi_html RIBOSOMEMOLECULE: 50S RIBOSOMAL PROTEIN L7/L12; CHAIN: A, B; MOLECULE: 50S RIBOSOMAL PROTEIN L7/L12; CHAIN: C, DTHERMOTOGA MARITIMA; BACTERIA; THERMOTOGA MARITIMA; BACTERIAM.C.WAHL,G.P.BOURENKOV,H.D.BARTUNIK,R.HUBER1dd3 2000_11_15
2000_11_151dpu Apdb_asciidssp fasta psi_asciipsi_html DNA BINDING PROTEINMOLECULE: REPLICATION PROTEIN A (RPA32) C-TERMINAL DOMAIN; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 172-270); ENGINEERED: YES; MOLECULE: URACIL DNA GLYCOSYLASE (UNG2); CHAIN: B; FRAGMENT: RESIDUES 73-88; ENGINEERED: YES; OTHER_DETAILS: CHEMICALLY SYNTHESIZEDHOMO SAPIENS; HUMAN; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE SEQUENCE IS FOUND IN THE NUCLEAR [UNG2(73-88)] AND MITOCHONDRIAL [UNG1(64-79)] FORMS OF HUMAN URACIL-DNA GLYCOSYLASEG.MER,A.M.EDWARDS,W.J.CHAZIN1dpu 2000_11_15
2000_11_151e5k Apdb_asciidssp fasta psi_asciipsi_html MOLYBDOPTERIN NUCLEOTIDYL-TRANSFERASEMOLECULE: MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A; CHAIN: A; SYNONYM: MOBA, PROTEIN FA; ENGINEERED: YES; OTHER_DETAILS: THE WILD-TYPE CONSTRUCT WAS C-TERMINALLY EXTENDED WITH A 7-RESIDUE NICKEL AFFINITY TAG OF SEQUENCE SER-HIS-HIS-HIS-HIS-HIS-HIS.ESCHERICHIA COLI; STRAIN: K12; CELLULAR_LOCATION: CYTOPLASM; GENE: MOBA;C.E.M.STEVENSON,F.SARGENT,G.BUCHANAN,T.PALMER,D.M.LAWSON1e5k 2000_11_15
2000_11_151eij Apdb_asciidssp fasta psi_asciipsi_html DNA BINDING PROTEINMOLECULE: HYPOTHETICAL PROTEIN MTH1615; CHAIN: A; OTHER_DETAILS: HOMOLOGOUS TO HUMAN APOPTOSIS PROTEIN TFAR19METHANOBACTERIUM THERMOAUTOTROPHICUMD.CHRISTENDAT,V.BOOTH,M.GERNSTEIN,C.H.ARROWSMITH,A.M.EDWARDS1eij 2000_11_15
2000_11_151eyb Apdb_asciidssp fasta psi_asciipsi_html OXIDOREDUCTASEMOLECULE: HOMOGENTISATE 1,2-DIOXYGENASE; CHAIN: A; EC: 1.13.11.5; ENGINEERED: YESHOMO SAPIENS; HUMAN; TISSUE: LIVER;D.E.TIMM,G.P.TITUS,M.A.PENALVA,H.A.MUELLER,S.M.DE CORDOBA1eyb 2000_11_15
2000_11_151eq2 Apdb_asciidssp fasta psi_asciipsi_html ISOMERASEMOLECULE: ADP-L-GLYCERO-D-MANNOHEPTOSE 6-EPIMERASE; CHAIN: A, B, C, D, E, F, G, H, I, J; EC: 5.1.3.20; ENGINEERED: YESESCHERICHIA COLI; BACTERIA;A.M.DEACON,Y.S.NI,W.G.COLEMAN JR.,S.E.EALICK1eq2 2000_11_15
2000_11_151by6 Apdb_asciidssp fasta psi_asciipsi_html SIGNALING PROTEINMOLECULE: APOLIPOPROTEIN C-II; CHAIN: A; FRAGMENT: RESIDUES 44-79; ENGINEERED: YESSYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE NATURALLY OCCURS IN HUMANS (HOMO SAPIENS). SYNTHESISED ON AN ABI 430A SYNTHESISER (PE APPLIED BIOSYSTEMS, FOSTER CITY, CA, USA) BY THE SOLID PHASE METHOD USING T-BOC/BENZYL PROTECTING GROUPS AND A PHENYL-ACETAMIDOMETHYL- POLYSTYRENE SUPPORT WITH FAST HBTU/HOBT COUPLING. AFTER SYNTHESIS THE PEPTIDE WAS DEPROTECTED AND CLEAVED FROM THE RESIN WITH TMSBR.R.STORJOHANN,A.ROZEK,J.T.SPARROW,R.J.CUSHLEY1by6 2000_11_15
2000_11_151qojApdb_asciidssp fasta psi_asciipsi_html DNA EXCISION REPAIRMOLECULE: UVRB; CHAIN: A, B; FRAGMENT: C-TERMINAL DOMAINESCHERICHIA COLI; STRAIN: PP3398M.SOHI,A.ALEXANDROVICH,G.MOOLENAAR,R.VISSE,N.GOOSEN, X.VERNEDE,J.FONTECILLA-CAMPS,J.CHAMPNESS,M.R.SANDERSON1qoj 2000_11_15

Notations used

date date of weekly update
id PDB identifier of protein
chains PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII ASCII (plain text) version of raw PDB file
DSSP ASCII ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII ASCII version of PDB sequence in FASTA format
PSI-Blast HTML gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header PDB 'HEADER' field
PDB compnd PDB 'COMPND' field
PDB source PDB 'SOURCE' field
PDB author PDB 'AUTHOR' field