EVA: Detailed information for proteins added on: 2000_12_20

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2000_12_20	1f7c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: RHOGAP PROTEIN; CHAIN: A; FRAGMENT: GTPASE ACTIVATING PROTEIN (GAP) FOR RHO FAMILY GTPASES; ENGINEERED: YES	GALLUS GALLUS; CHICKEN;	K.L.LONGENECKER,U.DEREWENDA,P.J.SHEFFIELD,Y.ZHENG, Z.S.DEREWENDA	1f7c	2000_12_20
2000_12_20	1f2d	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LYASE	MOLECULE: 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE; CHAIN: A, B, C, D; EC: 4.1.99.4; ENGINEERED: YES	HANSENULA SATURNUS; YEAST;	M.YAO,T.OSE,H.SUGIMOTO,A.HORIUCHI,A.NAKAGAWA,D.YOKOI, T.MURAKAMI,M.HONMA,S.WAKATSUKI,I.TANAKA	1f2d	2000_12_20
2000_12_20	1fjn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: DEFENSIN MGD-1; CHAIN: A; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: MGD-1 WAS OBTAINED BY SOLID PHASE SYNTHESIS BY USING THE FMOC STRATEGY. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN MEDITERRANEAN MUSSEL (MYTILUS GALLOPROVINCIALIS)	Y.S.YANG	1fjn	2000_12_20
2000_12_20	1fwk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: HOMOSERINE KINASE; CHAIN: A, B, C, D; SYNONYM: HK; EC: 2.7.1.39; ENGINEERED: YES	METHANOCOCCUS JANNASCHII; ARCHAEA;	T.ZHOU,M.DAUGHERTY,N.V.GRISHIN,A.L.OSTERMAN,H.ZHANG	1fwk	2000_12_20
2000_12_20	1gg4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6- DIAMINOPIMELATE-D-ALANYL-D-ALANYL LIGASE; CHAIN: A, B; SYNONYM: D-ALANYL-D-ALANINE-ADDING ENZYME, UDP-MURNAC- PENTAPEPTIDE SYNTHETASE; EC: 6.3.2.15; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA;	Y.YAN,S.MUNSHI,Z.CHEN	1gg4	2000_12_20
2000_12_20	1d7y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: FERREDOXIN REDUCTASE; CHAIN: A; ENGINEERED: YES	PSEUDOMONAS SP.; BACTERIA; STRAIN: KKS102;	T.SENDA,T.YAMADA,N.SAKURAI,M.KUBOTA,T.NISHIZAKI,E.MASAI, M.FUKUDA,Y.MITSUI	1d7y	2000_12_20
2000_12_20	1dmg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	MOLECULE: RIBOSOMAL PROTEIN L4; CHAIN: A; ENGINEERED: YES	THERMOTOGA MARITIMA;	M.WORBS,R.HUBER,M.C.WAHL	1dmg	2000_12_20
2000_12_20	1eo1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS	MOLECULE: HYPOTHETICAL PROTEIN MTH1175; CHAIN: A; ENGINEERED: YES	METHANOBACTERIUM THERMOAUTOTROPHICUM; ARCHAEA;	J.R.CORT,M.A.KENNEDY,C.H.ARROWSMITH	1eo1	2000_12_20

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field