EVA: Detailed information for proteins added on: 2001_02_14

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_02_14	1fkm	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ENDOCYTOSIS/EXOCYTOSIS	MOLECULE: GYP1P; CHAIN: A; FRAGMENT: YPT/RAB-GAP DOMAIN, RESIDUES 248-637; SYNONYM: ORF YOR070C; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; OTHER_DETAILS: GENOMIC DNA	A.RAK,R.FEDOROV,K.ALEXANDROV,S.ALBERT,R.S.GOODY,D.GALLWITZ, A.J.SCHEIDIG	1fkm	2001_02_14
2001_02_14	1g9r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: GLYCOSYL TRANSFERASE; CHAIN: A; EC: 2.4.1.-; ENGINEERED: YES; MUTATION: YES	NEISSERIA MENINGITIDIS; BACTERIA; GENE: LGTC;	K.PERSSON,D.L.HOA,M.DIEKELMANN,W.W.WAKARCHUK,S.G.WITHERS, N.C.J.STRYNADKA	1g9r	2001_02_14
2001_02_14	1g8y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: REGULATORY PROTEIN REPA; CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; SYNONYM: REPLICATION PROTEIN A; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; GENE: REPA ON PLASMID INCQ RSF1010;	T.NIEDENZU,D.ROELEKE,G.BAINS,E.SCHERZINGER,W.SAENGER	1g8y	2001_02_14
2001_02_14	1eg7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE	MOLECULE: FORMYLTETRAHYDROFOLATE SYNTHETASE; CHAIN: A, B; EC: 6.3.4.3; ENGINEERED: YES	MOORELLA THERMOACETICA; BACTERIA;	R.RADFAR,R.SHIN,G.M.SHELDRICK,W.MINOR,C.R.LOVELL,J.D.ODOM, R.B.DUNLAP,L.LEBIODA	1eg7	2001_02_14
2001_02_14	1eyr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: CMP-N-ACETYLNEURAMINIC ACID SYNTHETASE; CHAIN: A, B; SYNONYM: ACYLNEURAMINATE CYTIDYLYLTRANSFERASE; EC: 2.7.7.43	NEISSERIA MENINGITIDIS; BACTERIA	S.C.MOSIMANN,M.GILBERT,D.DOMBROWSKI,W.WAKARCHUK, N.C.J.STRYNADKA	1eyr	2001_02_14
2001_02_14	1hqo	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: URE2 PROTEIN; CHAIN: A, B; FRAGMENT: NITROGEN REGULATION FRAGMENT; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST; GENE: URE2;	T.C.UMLAND,K.L.TAYLOR,S.RHEE,R.B.WICKNER,D.R.DAVIES	1hqo	2001_02_14
2001_02_14	1i25	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: HUWENTOXIN-II; CHAIN: A; SYNONYM: HWTX-II	SELENOCOSMIA HUWENA; CHINESE BIRD HUNTING SPIDER; ORGAN: VENOM GLAND; OTHER_DETAILS: VENOM	Q.SHU,S.Y.LU,X.C.GU,S.P.LIANG	1i25	2001_02_14

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field