EVA: Detailed information for proteins added on: 2001_03_14

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_03_14	1fn9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: OUTER-CAPSID PROTEIN SIGMA 3; CHAIN: A, B; ENGINEERED: YES	REOVIRUS SP.; VIRUS;	A.M.OLLAND,J.JANE-VALBUENA,L.A.SCHIFF,M.L.NIBERT, S.C.HARRISON	1fn9	2001_03_14
2001_03_14	1g9l	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; CHAIN: A; FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 498-636); SYNONYM: POLY(A) BINDING PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	G.KOZLOV,J.-F.TREMPE,K.KHALEGHPOUR,A.KAHVEJIAN,I.EKIEL, K.GEHRING	1g9l	2001_03_14
2001_03_14	1g5h	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT; CHAIN: A, B, C, D; ENGINEERED: YES	MUS MUSCULUS; MOUSE; GENE: DNA POLYMERASE GAMMA SUBUNIT B;	J.A.CARRODEGUAS,K.THEIS,D.F.BOGENHAGEN,C.KISKER	1g5h	2001_03_14
2001_03_14	1g12	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PEPTIDYL-LYS METALLOENDOPEPTIDASE; CHAIN: A; EC: 3.4.24.20	GRIFOLA FRONDOSA; FUNGI; TISSUE: FRUITING BODY	T.HORI,T.KUMASAKA,M.YAMAMOTO,T.NONAKA,N.TANAKA,Y.HASHIMOTO, T.UEKI,K.TAKIO	1g12	2001_03_14
2001_03_14	1ggq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: OUTER SURFACE PROTEIN C; CHAIN: A, B, C, D; FRAGMENT: RESIDUES 38-210; SYNONYM: OSPC; ENGINEERED: YES	BORRELIA BURGDORFERI; LYME DISEASE SPIROCHETE; STRAIN: B31;	J.J.DUNN,C.L.LAWSON	1ggq	2001_03_14
2001_03_14	1ekp	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: BRANCHED CHAIN AMINO ACID AMINOTRANSFERASE (MITOCHONDRIAL); CHAIN: A, B; SYNONYM: BCAT(M); EC: 2.6.1.42; ENGINEERED: YES	HOMO SAPIENS; HUMAN;	N.H.YENNAWAR,J.H.DUNBAR,M.CONWAY,S.M.HUTSON,G.K.FARBER	1ekp	2001_03_14
2001_03_14	1eu8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SUGAR BINDING PROTEIN	MOLECULE: TREHALOSE/MALTOSE BINDING PROTEIN; CHAIN: A; ENGINEERED: YES	THERMOCOCCUS LITORALIS;	J.DIEZ,K.DIEDERICHS,G.GRELLER,R.HORLACHER,W.BOOS,W.WELTE	1eu8	2001_03_14
2001_03_14	1hhn	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MOLECULAR CHAPERONE	MOLECULE: CALRETICULIN; CHAIN: A; FRAGMENT: P-DOMAIN RESIDUES 205-305; ENGINEERED: YES	RATTUS NORVEGICUS; NORWAY RAT; CELLULAR_LOCATION: ENDOPLASMIC RETICULUM;	L.ELLGAARD,R.RIEK,T.HERRMANN,P.GUNTERT,D.BRAUN,A.HELENIUS, K.WUTHRICH	1hhn	2001_03_14
2001_03_14	1hg3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: TRIOSEPHOSPHATE ISOMERASE; CHAIN: A, B, C, D, E, F, G, H; EC: 5.3.1.1; ENGINEERED: YES; OTHER_DETAILS: 2-CARBOXYETHYLPHOSPHONIC ACID IN THE ACTIVE SITE	PYROCOCCUS WOESEI;	H.WALDEN,G.S.BELL,R.J.M.RUSSELL,B.SIEBERS,R.HENSEL, G.L.TAYLOR	1hg3	2001_03_14

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field