Supporting Table 1

Supporting Table 1. Comparative annotation of Buchnera genomes. LCSA, last common symbiont ancestor of Buchnera strains. BBp, Buchnera aphidicola, endosymbiont of Baizongia pistaciae. BAp, Buchnera aphidicola, endosymbiont of Acyrthosiphon pisum. Bsg, Buchnera aphidicola, endosymbiont of Schizaphis graminum. In green, missing genes in some of the three symbionts; in red, pseudogenes.


Position	LCSA	BBp	BAp	BSg	Function
1	gidA	+	+	+	DNA replication, recombination, modification and repair
2	atpB	+	+	+	Energy metabolism
3	atpE	+	+	+	Energy metabolism
4	atpF	+	+	+	Energy metabolism
5	atpH	+	+	+	Energy metabolism
6	atpA	+	+	+	Energy metabolism
7	atpG	+	+	+	Energy metabolism
8	atpD	+	+	+	Energy metabolism
9	atpC	+	+	+	Energy metabolism
10	gyrB	+	+	+	DNA replication, recombination, modification and repair
11	dnaN	+	+	+	DNA replication, recombination, modification and repair
12	dnaA	+	+	+	DNA replication, recombination, modification and repair
13	rpmH	+	+	+	Translation, post-translational modification
14	rnpA	+	+	+	DNA replication, recombination, modification and repair
15	yidD	+	-	+	Hypothetical, unclassified, unknown
16	yidC	+	+	+	Hypothetical, unclassified, unknown
17	thdF	+	+	+	Cell processes (incl. adaptation, protection)
18	mutH	+	-	-	DNA replication, recombination, modification and repair
19	tRNA-Phe	+	+	+	RNAs
20	mopB	+	+	+	Cell processes (incl. adaptation, protection)
21	mopA	+	+	+	Cell processes (incl. adaptation, protection)
22	yjeK	+	-	+	Amino acid biosynthesis and metabolism
23	efp	+	+	+	Translation, post-translational modification
24	dnaC	+	+	+	DNA replication, recombination, modification and repair
25	dnaT	-	+	+	DNA replication, recombination, modification and repair
26	yhhF	+	+	+-	Hypothetical, unclassified, unknown
27	ftsY	+	+	+	Cell processes (incl. adaptation, protection)
28	rpoH	+	+	+	Transcription, RNA processing and degradation
29	glmS	+	+	+	Central intermediary metabolism
30	glmU	+	+	+	Central intermediary metabolism
31	yigL	+	+-	+	Hypothetical, unclassified, unknown
32	metR	-	+-	+	Amino acid biosynthesis and metabolism
33	metE	+	+	+	Amino acid biosynthesis and metabolism
34	purH	+	+	+	Nucleotide biosynthesis and metabolism
35	hupA	+	+	+	DNA replication, recombination, modification and repair
36	rpoC	+	+	+	Transcription, RNA processing and degradation
37	rpoB	+	+	+	Transcription, RNA processing and degradation
38	rplL	+	+	+	Translation, post-translational modification
39	rplJ	+	+	+	Translation, post-translational modification
40	rplA	+	+	+	Translation, post-translational modification
41	rplK	+	+	+	Translation, post-translational modification
42	nusG	+	+	+	Transcription, RNA processing and degradation
43	secE	+	+	+	Transport and binding proteins
44	tRNA-Thr	+	+	+	RNAs
45	tRNA-Gly	+	+	+	RNAs
46	tRNA-Tyr	+	+	+	RNAs
47	tRNA-Thr	+	+	+	RNAs
48	murB	+	+	+	Cell structure
49	metF	+	+	+	Central intermediary metabolism
50	argE	-	+	+	Amino acid biosynthesis and metabolism
51	argC	-	+	+	Amino acid biosynthesis and metabolism
52	argB	-	+	+	Amino acid biosynthesis and metabolism
53	argG	+	+	+	Amino acid biosynthesis and metabolism
54	argH	+	+	+	Amino acid biosynthesis and metabolism
55	yibN	+	+	+	Hypothetical, unclassified, unknown
56	secB	-	+	+	Transport and binding proteins
57	cysE	+	+	+	Amino acid biosynthesis and metabolism
58	rpoD	+	+	+	Transcription, RNA processing and degradation
59	dnaG	+	+	+	DNA replication, recombination, modification and repair
60	rpsU	+	+	+	Translation, post-translational modification
61	ygjD	+	+	+	Energy metabolism
62	ribB	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
63	yb3052	-	+	+	Central intermediary metabolism
64	cca	+	+	+	Translation, post-translational modification
65	bacA	+	+	+	Cell processes (incl. adaptation, protection)
66	crr	+	+	+	Transport and binding proteins
67	ptsI	+	+	+	Transport and binding proteins
68	ptsH	+	+	+	Transport and binding proteins
69	cysK	-	+	+	Amino acid biosynthesis and metabolism
70	lig	+	+	+-	DNA replication, recombination, modification and repair
71	tRNA-Lys	+	+	+	RNAs
72	tRNA-Val	+	+	+	RNAs
73	gltX	+	+	+	Translation, post-translational modification
74	tRNA-Ala	+	+	+	RNAs
75	fliE	+	+	+	Cell structure
76	fliF	+	+	+	Cell structure
77	fliG	+	+	+	Cell structure
78	fliH	+	+	+	Cell structure
79	fliI	+	+	+	Cell processes (incl. adaptation, protection)
80	fliJ	+	+	+	Cell processes (incl. adaptation, protection)
81	fliK	+	+	+	Cell processes (incl. adaptation, protection)
82	fliM	+	+	+	Cell structure
83	fliN	+	+	+	Cell structure
84	fliOP	+	+	+	Cell structure
85	fliQ	+	+	+	Cell structure
86	fliR	+	+	+	Cell structure
87	rpmG	+	+	+	Translation, post-translational modification
88	rpmB	+	+	+	Translation, post-translational modification
89	ytfN	+	+	+	Hypothetical, unclassified, unknown
90	ppa	+	+	+	Central intermediary metabolism
91	pmbA	+	+	+	Translation, post-translational modification
92	rnpB	+	+	+	RNAs
93	yraL	+	+	+	Hypothetical, unclassified, unknown
94	fabB	+	+	+	Fatty acid and phospholipid metabolism
95	talA	+	+	+	Energy metabolism
96	tktB	+	+	+	Energy metabolism
97	dapE	+	+	+	Amino acid biosynthesis and metabolism
98	dapA	+	+	+	Amino acid biosynthesis and metabolism
99	bcp	-	-	+	Transport and binding proteins
100	aroC	+	+	+	Amino acid biosynthesis and metabolism
101	yb2331	+	+	+	Hypothetical, unclassified, unknown
102	hisG	+	+	+	Amino acid biosynthesis and metabolism
103	hisD	+	+	+	Amino acid biosynthesis and metabolism
104	hisC	+	+	+	Amino acid biosynthesis and metabolism
105	hisB	+	+	+	Amino acid biosynthesis and metabolism
106	hisH	+	+	+	Amino acid biosynthesis and metabolism
107	hisA	+	+	+	Amino acid biosynthesis and metabolism
108	hisF	+	+	+	Amino acid biosynthesis and metabolism
109	hisI	+	+	+	Amino acid biosynthesis and metabolism
110	gnd	+	+	+	Energy metabolism
111	dcd	+	+	+	Nucleotide biosynthesis and metabolism
112	metG	+	+	+	Translation, post-translational modification
113	mesJ	+	+	+	Cell processes (incl. adaptation, protection)
114	tRNA-Val	+	+	+	RNAs
115	norM	+	-	-	Hypothetical, unclassified, unknown
116	ribE	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
117	rnfA	+	+	+	Other known genes
118	rnfB	+	+	+	Other known genes
119	rnfC	+	+	+-	Other known genes
120	ydgO	+	+	+	Other known genes
121	rnfG	+	+	+	Other known genes
122	ydgQ	+	+	+	Hypothetical, unclassified, unknown
123	nth	+	+	+	Transcription, RNA processing and degradation
124	priA	-	+	+	DNA replication, recombination, modification and repair
125	tyrS	+	+	+	Translation, post-translational modification
126	ydiC	+	+	+	Hypothetical, unclassified, unknown
127	yb1688	+	+	+	Hypothetical, unclassified, unknown
128	aroH	+	+	+	Amino acid biosynthesis and metabolism
129	thrS	+	+	+	Translation, post-translational modification
130	infC	+	+-	+-	Translation, post-translational modification
131	rpmI	+	+	+	Translation, post-translational modification
132	rplT	+	+	+	Translation, post-translational modification
133	pheS	+	+	+	Translation, post-translational modification
134	pheT	+	+	+	Translation, post-translational modification
135	himA	-	+	+	DNA replication, recombination, modification and repair
136	queA	-	+	+	Translation, post-translational modification
137	tgt	-	+	+	Translation, post-translational modification
138	yajC	+	+	+	Hypothetical, unclassified, unknown
139	glyS	+	+	+	Translation, post-translational modification
140	glyQ	+	+	+	Translation, post-translational modification
141	folE	-	+-	+	Biosynthesis of cofactors, prosthetic groups and carriers
142	nfo	+	+	+	Transcription, RNA processing and degradation
143	rplY	+	+	+	Translation, post-translational modification
144	yabI	+	+	+	Hypothetical, unclassified, unknown
145	surA	-	+	+	Other known genes
146	ksgA	+	+	+	Cell processes (incl. adaptation, protection)
147	apaH	+	+	+	Nucleotide biosynthesis and metabolism
148	folA	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
149	carB	+	+	+	Nucleotide biosynthesis and metabolism
150	carA	+	+	+	Nucleotide biosynthesis and metabolism
151	dapB	+	+	+	Amino acid biosynthesis and metabolism
152	lytB	+	+	+	Regulatory function
153	lspA	+	+	+	Transport and binding proteins
154	ileS	+	+	+	Translation, post-translational modification
155	ribF	-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
156	rpsT	+	+	+	Translation, post-translational modification
157	dnaJ	+	+	+	Cell processes (incl. adaptation, protection)
158	dnaK	+	+	+	Cell processes (incl. adaptation, protection)
159	nuoA	+	+	+	Energy metabolism
160	nuoB	+	+	+	Energy metabolism
161	nuoCD	+	+	+	Energy metabolism
162	nuoE	+	+	+	Energy metabolism
163	nuoF	+	+	+	Energy metabolism
164	nuoG	+	+	+	Energy metabolism
165	nuoH	+	+	+	Energy metabolism
166	nuoI	+	+	+	Energy metabolism
167	nuoJ	+	+	+	Energy metabolism
168	nuoK	+	+	+	Energy metabolism
169	nuoL	+	+	+	Energy metabolism
170	nuoM	+	+	+	Energy metabolism
171	nuoN	+	+	+	Energy metabolism
172	ygjT	+	-	+	Transport and binding proteins
173	folC	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
174	cvpA	+	+-	+-	Cell processes (incl. adaptation, protection)
175	prsA	+	+	+	Nucleotide biosynthesis and metabolism
176	ychB--pseudogene	+-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
177	prfA	+	+	+	Translation, post-translational modification
178	hemK	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
179	ychA	+	+	+	Hypothetical, unclassified, unknown
180	nadE	-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
181	ackA	+	+	+	Energy metabolism
182	pta	+	+	+	Energy metabolism
183	yfaE	+	+	+-	Hypothetical, unclassified, unknown
184	nrdB	+	+	+	Nucleotide biosynthesis and metabolism
185	nrdA	+	+	+	Nucleotide biosynthesis and metabolism
186	gyrA	+	+	+	DNA replication, recombination, modification and repair
187	yba2	+	+	+	Hypothetical, unclassified, unknown
188	ahpC	+	+	+	Cell processes (incl. adaptation, protection)
189	ung	+	+	+-	DNA replication, recombination, modification and repair
190	grpE	+	+	+	Cell processes (incl. adaptation, protection)
191	yfjB	+	+	+	Hypothetical, unclassified, unknown
192	tmRNA	+	+	+	RNAs
193	smpA	-	+	+	Cell structure
194	ydhD	+	+	+	Hypothetical, unclassified, unknown
195	rnt	+	+	+	DNA replication, recombination, modification and repair
196	sodA	+	+	+	Cell processes (incl. adaptation, protection)
197	pth	+	+	+	Translation, post-translational modification
198	ychF	+	+	+	Hypothetical, unclassified, unknown
199	thrC	+	+	+	Amino acid biosynthesis and metabolism
200	thrB	+	+	+	Amino acid biosynthesis and metabolism
201	thrA	+	+	+	Amino acid biosynthesis and metabolism
202	hpt	-	+	+	Nucleotide biosynthesis and metabolism
203	panC	-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
204	panB	-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
205	dksA	+	+	+	DNA replication, recombination, modification and repair
206	truA	+	+	+	Translation, post-translational modification
207	mrcB	+	+	+-	Cell structure
208	secA	+	+	+	Transport and binding proteins
209	mutT	-	+	+	Nucleotide biosynthesis and metabolism
210	yacE	-	+	+	Hypothetical, unclassified, unknown
211	guaC	+	+	+	Nucleotide biosynthesis and metabolism
212	aceE	+	+	+	Energy metabolism
213	aceF	+	+	+	Energy metabolism
214	lpdA	+	+	+	Energy metabolism
215	speD	-	+	+	Central intermediary metabolism
216	speE	-	+	+	Central intermediary metabolism
217	pfs	+	+	+	Hypothetical, unclassified, unknown
218	yadR	+	+	+	Hypothetical, unclassified, unknown
219	ftsZ	+	+	+	Cell processes (incl. adaptation, protection)
220	ftsA	+	+	+	Cell processes (incl. adaptation, protection)
221	ddlB	+	+-	+	Cell structure
222	murC	+	+	+-	Cell structure
223	murG	+	+	+	Cell structure
224	ftsW	+	+	+	Cell processes (incl. adaptation, protection)
225	murD	+	+	+	Cell structure
226	mraY	+	+	+-	Cell structure
227	murF	+	+	+-	Cell structure
228	murE	+	+	+-	Cell structure
229	ftsI	+	+	+	Cell processes (incl. adaptation, protection)
230	ftsL	+	+	+	Cell processes (incl. adaptation, protection)
231	yabC	+	+	+	Hypothetical, unclassified, unknown
232	ilvH	+	+	+	Amino acid biosynthesis and metabolism
233	ilvI	+	+	+	Amino acid biosynthesis and metabolism
234	apbE	+	+-	+-	Biosynthesis of cofactors, prosthetic groups and carriers
235	htrA	+	+	+	Translation, post-translational modification
236	dapD	+	+	+	Amino acid biosynthesis and metabolism
237	map	+	+	+	Translation, post-translational modification
238	rpsB	+	+	+	Translation, post-translational modification
239	tsf	+	+	+	Translation, post-translational modification
240	pyrH	+	+	+	Nucleotide biosynthesis and metabolism
241	frr	+	+	+	Translation, post-translational modification
242	dxr--pseudogene	+-	+	+	Hypothetical, unclassified, unknown
243	uppS	+	+	+	Central intermediary metabolism
244	yaeT	-	+	+	Cell structure
245	fabZ	+	-	+	Fatty acid and phospholipid metabolism
246	dnaE	+	+	+	DNA replication, recombination, modification and repair
247	proS	+	+	+	Translation, post-translational modification
248	flhB	+	+	+	Cell processes (incl. adaptation, protection)
249	flhA	+	+	+	Cell structure
250	argS	+	+	+	Translation, post-translational modification
251	rrf-16S rRNA	+	+	+	RNAs
252	tRNA-Ile	+	+	+	RNAs
253	tRNA-Ala	+	+	+	RNAs
254	gloB	+	+	+	Hypothetical, unclassified, unknown
255	rnhA	+	+-	+	DNA replication, recombination, modification and repair
256	dnaQ	+	+	+	DNA replication, recombination, modification and repair
257	tRNA-Asp	+	+	+	RNAs
258	lpcA	-	+	+	Cell structure
259	gpt	+	+	+	Nucleotide biosynthesis and metabolism
260	grpE1	+	+	+	Cell processes (incl. adaptation, protection)
261	yfjF	+	+	+	Hypothetical, unclassified, unknown
262	smpB	+	+	+	Hypothetical, unclassified, unknown
263	yfhC	+	+	+	Other known genes
264	acpS	+	+	+	Fatty acid and phospholipid metabolism
265	era	+	+	+	Regulatory function
266	rnc	+	+	+	DNA replication, recombination, modification and repair
267	lepB	+	+	+	Transport and binding proteins
268	lepA	+	+	+	Translation, post-translational modification
269	trmU	+	+	+	Translation, post-translational modification
270	ycfC	+	+	-	Hypothetical, unclassified, unknown
271	purB	+	+	+	Nucleotide biosynthesis and metabolism
272	mltE	+	+	+-	Energy metabolism
273	fabI	+	+	+	Fatty acid and phospholipid metabolism
274	rnb	+	+	+	DNA replication, recombination, modification and repair
275	ychE	+	+	+	Transport and binding proteins
276	lipB	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
277	lipA	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
278	pyrF	+	+	+	Nucleotide biosynthesis and metabolism
279	ribA	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
280	hns	-	+	-	DNA replication, recombination, modification and repair
281	cls	+	+	+	Fatty acid and phospholipid metabolism
282	yciA	+	+	+	Hypothetical, unclassified, unknown
283	yciB	+	+	+	Cell processes (incl. adaptation, protection)
284	yciC	+	+	+	Hypothetical, unclassified, unknown
285	trpA	+	+	+	Amino acid biosynthesis and metabolism
286	trpB	+	+	+	Amino acid biosynthesis and metabolism
287	trpC	+	+	+	Amino acid biosynthesis and metabolism
288	trpD	+	+	+	Amino acid biosynthesis and metabolism
289	yedA--pseudogene	+-	+	+	Energy metabolism
290	yciL	+	+	+	Hypothetical, unclassified, unknown
291	sohB	+	+	+	Cell processes (incl. adaptation, protection)
292	topA	-	+	+	DNA replication, recombination, modification and repair
293	suhB	+	+	+	Regulatory function
294	yfgB	+	+	+	Other known genes
295	gcpE--pseudogene	+-	+	+	Cell structure
296	hisS	+	+	+	Translation, post-translational modification
297	glyA	+	+	+	Amino acid biosynthesis and metabolism
298	bioD	+	+	+-	Biosynthesis of cofactors, prosthetic groups and carriers
299	bioC	+	-	-	Biosynthesis of cofactors, prosthetic groups and carriers
300	bioF	+	-	-	Biosynthesis of cofactors, prosthetic groups and carriers
301	bioB	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
302	bioA	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
303	ybhE	+	+	+	Central intermediary metabolism
304	mfd	+	+	+-	DNA replication, recombination, modification and repair
305	ycfU	-	+	+	Hypothetical, unclassified, unknown
306	ycfV	-	+	+	Hypothetical, unclassified, unknown
307	ycfW	-	+-	+	Other known genes
308	gapA	+	+	+	Energy metabolism
309	yqcD	-	-	+	Hypothetical, unclassified, unknown
310	fldA	+	+	+	Energy metabolism
311	phrB	+	+	+-	DNA replication, recombination, modification and repair
312	ybgI	+	+	+	Hypothetical, unclassified, unknown
313	sucA	+	+	+	Energy metabolism
314	sucB	+	+	+	Energy metabolism
315	pal	+	-	-	Cell structure
316	gpmA	+	+	+	Energy metabolism
317	pfkA	+	+	+	Energy metabolism
318	glpF	-	+	+	Transport and binding proteins
319	tpiA	+	+	+	Energy metabolism
320	himD	-	+	+	DNA replication, recombination, modification and repair
321	rpsA	+	+	+	Translation, post-translational modification
322	cmk	+	+-	+-	Nucleotide biosynthesis and metabolism
323	aroA	+	+	+	Amino acid biosynthesis and metabolism
324	serC	+	+	+	Amino acid biosynthesis and metabolism
325	serS	+	+	+	Translation, post-translational modification
326	trxB	+	+	+	Nucleotide biosynthesis and metabolism
327	infA	+	+	+	Translation, post-translational modification
328	aspS	+	+	+	Translation, post-translational modification
329	znuB	+	+	+	Transport and binding proteins
330	znuC	+	+	+	Transport and binding proteins
331	znuA	-	-	+	Transport and binding proteins
332	yebA	+	-	+	Cell structure
333	pykA	+	+	+	Energy metabolism
334	zwf	+	+	+	Energy metabolism
335	htpX	+	+	+	Cell processes (incl. adaptation, protection)
336	cspC	-	+	-	Transcription, RNA processing and degradation
337	yoaE	+	+	+	Hypothetical, unclassified, unknown
338	yeaZ	+	+	+	Hypothetical, unclassified, unknown
339	minE	+	+	+	Cell processes (incl. adaptation, protection)
340	minD	+	+	+	Cell processes (incl. adaptation, protection)
341	minC	+	+	+	Cell processes (incl. adaptation, protection)
342	yjjT	+	+	+	Transcription, RNA processing and degradation
343	tRNA-Leu	+	+	+	RNAs
344	tRNA--pseudo	+	+	+	RNAs
345	tRNA-Ser	+	+	+	RNAs
346	ompA	-	+	+	Cell structure
347	mviN	+	+	+	Cell processes (incl. adaptation, protection)
348	pyrC	-	+	+	Nucleotide biosynthesis and metabolism
349	flgN	-	+	+	Cell processes (incl. adaptation, protection)
350	flgA	-	+	+	Cell processes (incl. adaptation, protection)
351	flgB	+	+	+	Cell processes (incl. adaptation, protection)
352	flgC	+	+	+	Cell processes (incl. adaptation, protection)
353	flgD	-	+	+	Cell processes (incl. adaptation, protection)
354	flgE	-	+	+	Cell processes (incl. adaptation, protection)
355	flgF	+	+	+	Cell processes (incl. adaptation, protection)
356	flgG	+	+	+	Cell processes (incl. adaptation, protection)
357	flgH	+	+	+	Cell processes (incl. adaptation, protection)
358	flgI	+	+	+	Cell processes (incl. adaptation, protection)
359	flgJ	+	+	+	Cell processes (incl. adaptation, protection)
360	flgK	-	+	+	Cell processes (incl. adaptation, protection)
361	rne	+	+	+	DNA replication, recombination, modification and repair
362	rluC	+	+	+	Translation, post-translational modification
363	rpmF	+	+	+	Translation, post-translational modification
364	fabD	+	+-	+	Fatty acid and phospholipid metabolism
365	fabG	+	+	+	Fatty acid and phospholipid metabolism
366	acpP	+	+	+	Fatty acid and phospholipid metabolism
367	tmk	+	+	+	Nucleotide biosynthesis and metabolism
368	holB	+	+	+	DNA replication, recombination, modification and repair
369	ycfH	+	+	+	Hypothetical, unclassified, unknown
370	ptsG	+	+	+	Transport and binding proteins
371	ycfF	+	+	+	Hypothetical, unclassified, unknown
372	ycfM--pseudogene	+-	+	+-	Hypothetical, unclassified, unknown
373	ompF	-	+	+	Cell structure
374	asnS	+	+	+	Translation, post-translational modification
375	pncB	-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
376	pyrD	-	+	+	Nucleotide biosynthesis and metabolism
377	ycbY	-	+	+	Hypothetical, unclassified, unknown
378	uup	-	+	+	Transport and binding proteins
379	yceA	+	+	+	Hypothetical, unclassified, unknown
380	valS	+	+	+	Translation, post-translational modification
381	pepA	+	+	+	Translation, post-translational modification
382	argF	+	+	+	Amino acid biosynthesis and metabolism
383	pyrB	-	+	+	Nucleotide biosynthesis and metabolism
384	pyrI	-	+	+	Nucleotide biosynthesis and metabolism
385	yhaR	+	+	+	Hypothetical, unclassified, unknown
386	deaD	+	+	+	Transcription, RNA processing and degradation
387	pnp	+	+	+	Transcription, RNA processing and degradation
388	rpsO	+	+	+	Translation, post-translational modification
389	truB	+	+	+	Translation, post-translational modification
390	rbfA	+	+	+	Translation, post-translational modification
391	infB	+	+	+	Translation, post-translational modification
392	nusA	+	+	+	Transcription, RNA processing and degradation
393	tRNA-Leu		+	+	+ RNAs
394	secG--pseudo	+-	+	+	Transport and binding proteins
395	mrsA	+	+	+-	Central intermediary metabolism
396	hflB	+	+	+	Cell processes (incl. adaptation, protection)
397	ftsJ	+	+	+	Cell processes (incl. adaptation, protection)
398	greA	+	+	+	Translation, post-translational modification
399	yrbA	+	+	+	Hypothetical, unclassified, unknown
400	murA	+	+	+	Cell structure
401	rplU	+	+	+	Translation, post-translational modification
402	rpmA	+	+	+	Translation, post-translational modification
403	yhbZ	+	+	+	Other known genes
404	rpsI	+	+	+	Translation, post-translational modification
405	rplM	+	+	+	Translation, post-translational modification
406	pheA	+	+	+	Amino acid biosynthesis and metabolism
407	ffh	+	+	+	Transport and binding proteins
408	rpsP	+	+	+	Translation, post-translational modification
409	rimM	+	+	+	Other known genes
410	trmD	+	+	+	Translation, post-translational modification
411	rplS	+	+	+	Translation, post-translational modification
412	tldD	+	+	+	Hypothetical, unclassified, unknown
413	aroQ	+	+	+	Amino acid biosynthesis and metabolism
414	fis	-	+	+	DNA replication, recombination, modification and repair
415	rluD	+	+	+	Other known genes
416	yfiO	-	+	+	Hypothetical, unclassified, unknown
417	alaS	+	+	+	Translation, post-translational modification
418	csrA	+	+	+	Regulatory function
419	tRNA-Ser	+	+	+	RNAs
420	tRNA-Arg	+	+	+	RNAs
421	gshA	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
422	metK	-	+	+	Central intermediary metabolism
423	endA	+	+	+-	Transcription, RNA processing and degradation
424	yggJ	-	+	+	Hypothetical, unclassified, unknown
425	ygfA	+	-	+	Biosynthesis of cofactors, prosthetic groups and carriers
426	rpiA	+	+	+	Energy metabolism
427	tRNA-Gln	+	+	+	RNAs
428	tRNA-Leu	+	+	+	RNAs
429	tRNA-Met	+	+	+	RNAs
430	glnS	+	+	+	Translation, post-translational modification
431	pyrG	+	+	+	Nucleotide biosynthesis and metabolism
432	eno	+	+	+	Energy metabolism
433	ygcF	-	-	+	Hypothetical, unclassified, unknown
434	ygcM	-	-	+	Hypothetical, unclassified, unknown
435	nlpD	-	+	+-	Cell structure
436	ygbB--pseudo	+-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
437	ygbP	+-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
438	ygbQ	-	+	+	Hypothetical, unclassified, unknown
439	cysC	-	+	+	Central intermediary metabolism
440	cysN	-	+	+-	Central intermediary metabolism
441	cysD	-	+	+-	Central intermediary metabolism
442	cysG	-	+	+-	Biosynthesis of cofactors, prosthetic groups and carriers
443	cysH	-	+	+-	Central intermediary metabolism
444	cysI	-	+	+-	Central intermediary metabolism
445	cysJ	-	+	+	Central intermediary metabolism
446	mutS	+	+	+	DNA replication, recombination, modification and repair
447	dsbA	+	+	+	Translation, post-translational modification
448	polA	+	+	+	DNA replication, recombination, modification and repair
449	yihA	+	+	+	Hypothetical, unclassified, unknown
450	typA	+	+	+	Other known genes
451	gmk	+	+	+	Nucleotide biosynthesis and metabolism
452	thyA	+	+	+	Nucleotide biosynthesis and metabolism
453	lgt	+	+	+-	Fatty acid and phospholipid metabolism
454	lysA	+	+	+	Amino acid biosynthesis and metabolism
455	lysS	+	+	+	Translation, post-translational modification
456	prfB	+	+	+-	Translation, post-translational modification
457	ygfZ	+	+	+	Hypothetical, unclassified, unknown
458	yleA	+	+	+	Hypothetical, unclassified, unknown
459	ybeY	+	+	+	Hypothetical, unclassified, unknown
460	ybeX	+	+	+	Transport and binding proteins
461	leuS	+	+	+	Translation, post-translational modification
462	holA	+	+	+	DNA replication, recombination, modification and repair
463	ybeN	-	+	+	Hypothetical, unclassified, unknown
464	yhhP	+	+	+	Hypothetical, unclassified, unknown
465	asd	+	+	+	Amino acid biosynthesis and metabolism
466	yhgN	+	+	+	Hypothetical, unclassified, unknown
467	pgk	+	+	+	Energy metabolism
468	fba	+	+	+	Energy metabolism
469	yggB	+	+	+	Transport and binding proteins
470	recC	+	+	+	Transcription, RNA processing and degradation
471	recB	+	+	+	Transcription, RNA processing and degradation
472	recD	+	+	+	Transcription, RNA processing and degradation
473	argA	-	+	+	Amino acid biosynthesis and metabolism
474	tRNA-Met	+	+	+	RNAs
475	mltA	-	+	+	Cell structure
476	ribH	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
477	thiL	-	+	+	Other known genes
478	ribD	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
479	nusB	+	+	+	Transcription, RNA processing and degradation
480	dxs--pseudogene	+-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
481	ispA	-	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
482	yajR	+	+	+	Transport and binding proteins
483	yccK	+	+	+	Central intermediary metabolism
484	cyoE	+	+	+	Energy metabolism
485	cyoD	+	+	+	Energy metabolism
486	cyoC	+	+	+	Energy metabolism
487	cyoB	+	+	+	Energy metabolism
488	cyoA	+	+	+	Energy metabolism
489	bolA	+	+	+	Cell structure
490	tig	-	+	+	Cell processes (incl. adaptation, protection)
491	clpP	+	+	+	Translation, post-translational modification
492	clpX	+	+	+	Translation, post-translational modification
493	lon	+	+	+	Regulatory function
494	ppiD	+	+	+	Cell processes (incl. adaptation, protection)
495	ybaX	-	-	+	Hypothetical, unclassified, unknown
496	mdl	+	+	+	Transport and binding proteins
497	mdlB	+	+	+	Transport and binding proteins
498	dnaX	+	+	+	DNA replication, recombination, modification and repair
499	ybaB	+	+	+	Hypothetical, unclassified, unknown
500	htpG	+	+	+	Cell processes (incl. adaptation, protection)
501	adk	+	+	+	Nucleotide biosynthesis and metabolism
502	tRNA-Arg	+	+	+	RNAs
503	folD	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
504	cysS	+	+	+	Translation, post-translational modification
505	ybeD	+	+	+	Hypothetical, unclassified, unknown
506	cspE	+	+	+	Other known genes
507	rrs-5S rRNA	+	+	+	RNAs
508	rrl-23S rRNA	+	+	+	RNAs
509	tRNA-Glu	+	+	+	RNAs
510	aroE	+	+	+	Amino acid biosynthesis and metabolism
511	yrdC	+	+	+	Hypothetical, unclassified, unknown
512	smg	-	+	+	Hypothetical, unclassified, unknown
513	def	+	+	+	Translation, post-translational modification
514	fmt	+	+	+	Translation, post-translational modification
515	rplQ	+	+	+	Translation, post-translational modification
516	rpoA	+	+	+	Transcription, RNA processing and degradation
517	rpsD	+	+	+	Translation, post-translational modification
518	rpsK	+	+	+	Translation, post-translational modification
519	rpsM	+	+	+	Translation, post-translational modification
520	rpmJ	+	+	+	Translation, post-translational modification
521	secY	+	+	+	Transport and binding proteins
522	rplO	+	+	+	Translation, post-translational modification
523	rpmD	+	+	+	Translation, post-translational modification
524	rpsE	+	+	+	Translation, post-translational modification
525	rplR	+	+	+	Translation, post-translational modification
526	rplF	+	+	+	Translation, post-translational modification
527	rpsH	+	+	+	Translation, post-translational modification
528	rpsN	+	+	+	Translation, post-translational modification
529	rplE	+	+	+	Translation, post-translational modification
530	rplX	+	+	+	Translation, post-translational modification
531	rplN	+	+	+	Translation, post-translational modification
532	rpsQ	+	+	+	Translation, post-translational modification
533	rpmC	+	+	+	Translation, post-translational modification
534	rplP	+	+	+	Translation, post-translational modification
535	rpsC	+	+	+	Translation, post-translational modification
536	rplV	+	+	+	Translation, post-translational modification
537	rpsS	+	+	+	Translation, post-translational modification
538	rplB	+	+	+	Translation, post-translational modification
539	rplW	+	+	+	Translation, post-translational modification
540	rplD	+	+	+	Translation, post-translational modification
541	rplC	+	+	+	Translation, post-translational modification
542	rpsJ	+	+	+	Translation, post-translational modification
543	tuf	+	+	+	Translation, post-translational modification
544	fusA	+	+	+	Translation, post-translational modification
545	rpsG	+	+	+	Translation, post-translational modification
546	rpsL	+	+	+	Translation, post-translational modification
547	yheL	+	+	+	Hypothetical, unclassified, unknown
548	yheM	+	+	+	Hypothetical, unclassified, unknown
549	yheN	+	+	+	Hypothetical, unclassified, unknown
550	fkpA	+	+	+	Translation, post-translational modification
551	argD	-	+	+	Amino acid biosynthesis and metabolism
552	yhfC	+	+	+	Transport and binding proteins
553	trpS	+	+	+	Translation, post-translational modification
554	rpe	+	+	+	Energy metabolism
555	aroB	+	+	+	Amino acid biosynthesis and metabolism
556	aroK	+	+	+	Amino acid biosynthesis and metabolism
557	tRNA-Ser	+	+	+	RNAs
558	deoD	+	+	+	Nucleotide biosynthesis and metabolism
559	deoB	+	+	+	Nucleotide biosynthesis and metabolism
560	prfC	+	+	+	Translation, post-translational modification
561	ansA	-	+-	+-	Amino acid biosynthesis and metabolism
562	yhgI	+	+	+	Hypothetical, unclassified, unknown
563	bioH	+	-	+-	Biosynthesis of cofactors, prosthetic groups and carriers
564	ssb	+	+	+	DNA replication, recombination, modification and repair
565	dnaB	+	+	+	DNA replication, recombination, modification and repair
566	gshB	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
567	yqgE	+	-	-	Transcription, RNA processing and degradation
568	yqgF	+	+	+	Hypothetical, unclassified, unknown
569	leuA	+	+	+	Amino acid biosynthesis and metabolism
570	leuB	+	+	+	Amino acid biosynthesis and metabolism
571	leuC	+	+	+	Amino acid biosynthesis and metabolism
572	leuD	+	+	+	Amino acid biosynthesis and metabolism
573	yggS	+	+	+	Hypothetical, unclassified, unknown
574	yggW	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
575	yggH	+	+	+	Hypothetical, unclassified, unknown
576	mutY	+	+	+	DNA replication, recombination, modification and repair
577	yggX	+	+	+	Hypothetical, unclassified, unknown
578	murI	+	+	+	Cell structure
579	sbcB	+	+	+	Transcription, RNA processing and degradation
580	yeeX	-	+	+	Hypothetical, unclassified, unknown
581	tRNA-Asn	+	+	+	RNAs
582	tRNA-Met	+	+	+	RNAs
583	pyrE	+	+	+-	Nucleotide biosynthesis and metabolism
584	dut	+	+	+	Nucleotide biosynthesis and metabolism
585	cysQ	-	+	+-	Central intermediary metabolism
586	rplI	+	+	+	Translation, post-translational modification
587	rpsR	+	+	+	Translation, post-translational modification
588	rpsF	+	+	+	Translation, post-translational modification
589	vacB	-	+	+	Hypothetical, unclassified, unknown
590	purA	+	+	+	Nucleotide biosynthesis and metabolism
591	hflC	+	+	+	Translation, post-translational modification
592	hflK	+	+	+	Translation, post-translational modification
593	miaA	+	+	+-	Translation, post-translational modification
594	mutL	+	+	+	DNA replication, recombination, modification and repair
595	mtlD	+	+	+	Energy metabolism
596	mtlA	+	+	+	Transport and binding proteins
597	pgi	+	+	+	Energy metabolism
598	orn	+	+	+	Other known genes
599	tRNA-Gly	+	+	+	RNAs
600	amiB	+	+	+	Cell structure
601	rpmE	+	+	+	Translation, post-translational modification
602	hslV	+	+	+	Translation, post-translational modification
603	hslU	+	+	+	Cell processes (incl. adaptation, protection)
604	trpG	+	+	+	Amino acid biosynthesis and metabolism
605	trpE	+	+	+	Amino acid biosynthesis and metabolism
606	ibpA	-	+	+	Cell processes (incl. adaptation, protection)
607	fpr	+	+	+	Energy metabolism
608	yjeA	+	+	+-	Translation, post-translational modification
609	kdtB	-	+	+	Cell structure
610	yba3	+	+	+-	Hypothetical, unclassified, unknown
611	yba4	-	+	+	Hypothetical, unclassified, unknown
612	uspA	+	-	-	Cell processes (incl. adaptation, protection)
613	yhiQ	-	+	+	Hypothetical, unclassified, unknown
614	pitA	+	+	+	Transport and binding proteins
615	ynfM	+	+	+	Transport and binding proteins
616	dapF	+	+	+	Amino acid biosynthesis and metabolism
617	cyaY	+	+	+	Hypothetical, unclassified, unknown
618	hemC	-	+	+-	Biosynthesis of cofactors, prosthetic groups and carriers
619	hemD	-	+-	+-	Biosynthesis of cofactors, prosthetic groups and carriers
620	tRNA-Pro	+	+	+	RNAs
621	tRNA-His	+	+	+	RNAs
622	tRNA-Arg	+	+	+	RNAs
623	rho	+	+	+	Transcription, RNA processing and degradation
624	trxA	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
625	rep	+	+	+	DNA replication, recombination, modification and repair
626	ilvC	+	+	+	Amino acid biosynthesis and metabolism
627	ilvD	+	+	+	Amino acid biosynthesis and metabolism
628	tRNA-Trp	+	+	+	RNAs
629	yfhO	+	+	+	Biosynthesis of cofactors, prosthetic groups and carriers
630	iscU	+	+	+	Other known genes
631	hscB	+	+	+	Cell processes (incl. adaptation, protection)
632	hscA	+	+	+	Cell processes (incl. adaptation, protection)
633	fdx	+	+	+	Energy metabolism
634	yfgK	+	+	+	Other known genes
635	yfgM	+	+	+	Hypothetical, unclassified, unknown
636	repA1	+	+	+	DNA replication, recombination, modification and repair
637	yqhA	+	+	+	Hypothetical, unclassified, unknown
638	repA2	+	+	+	DNA replication, recombination, modification and repair