| Robert
Hoffmann, PhD
Chris Sander's Lab
Computational Biology Center, cBIO.
Memorial Sloan-Kettering Cancer Center, MSKCC.
1275 York Avenue. New York, NY 10021.
phone +1 646-735-8081, fax +1 646-735-0021
hoffmann@cbio.mskcc.org
|
curriculum vitae
|
| qualifications |
| 2001 |
|
2005 |
|
PhD, National Center of Biotechnology (CNB),
Madrid / Institute for Theoretical Chemistry, University of Vienna |
| 1998 |
/ |
1999 |
|
Master, Institute of Molecular Pathology, Boehringer
Ingelheim, Austria / Institute for Theoretical Chemistry, University of Vienna |
| 1997 |
/ |
1998 |
|
Performance scholarship |
| 1994 |
- |
1998 |
|
Genetics, University of Vienna |
| 1991 |
/ |
1992 |
|
Student exchange program, Canada |
| 1985 |
- |
1993 |
|
Secondary school, Vienna |
professional development |
| 2005 |
|
- |
|
PostDoc at the MSKCC |
| 2001 |
|
2005 |
|
PHD program at the National Center
of Biotechnology (CNB) |
| 2000 |
|
|
|
Independent IT-consultant and software
developer |
| 1999 |
|
|
|
Development and implementation
of tools and algorithms (Java and C++) for the administration
and analysis of microarray experiments at the Institute of Molecular
Pathology, Boehringer Ingelheim (IMP), Austria |
| 1998 |
/ |
1999 |
|
Diploma thesis in the area of structural
bioinformatics at the Institute for Theoretical Chemistry and
Molecular Structural Biology headed by Dr. Peter Schuster; "The
importance of short structural motifs in protein structure analysis". |
| 1997 |
|
|
|
Practical training; Development
of an application for the administration of clones and restriction
maps, "CloneMap"; Biochemical Institute, Vienna |
| publications |
| Implementing the iHOP concept for navigation of biomedical literature. Hoffmann, R., Valencia, A. Bioinformatics 21(suppl. 2), ii252-ii258 (2005). PDF , Suppl. Mat., Online Version |
| Text mining for metabolic pathways, signaling cascades, and protein networks. Hoffmann, R., Krallinger, M., Andres, E, Tamames, J., Blaschke, C., Valencia, A. Sci STKE 283, 21 (2005).
, PDF
|
| HCAD, closing the gap between breakpoints and genes. Hoffmann, R., Dopazo, J., Cigudosa, J.C., Valencia, A. Nucleic Acids Research 33,
D511-3 (2005).
, PDF |
| A gene network for navigating the literature. Hoffmann,
R., Valencia, A. Nature Genetics 36, 664 (2004).
, PDF |
| Protein interaction: same network, different hubs. Hoffmann,
R., Valencia, A. Trends Genet. 19(12), 681-683. (2003).
, PDF |
| Life cycles of successful genes. Hoffmann, R., Valencia,
A. Trends Genet. 19(2), 79-81. (2003).
, PDF |
| TIS7 interacts with the mammalian SIN3 histone deacetylase
complex in epithelial cells. Vietor, I., Vadivelu, S. K., Wick,
N., Hoffmann, R., Cotten, M. et al. Embo J 21, 4621-31
(2002).
, PDF
|
| Extracting information automatically from the biological
literature. Blaschke, C., Hoffmann, R., Oliveros, J.C. and
Valencia, A. Comp. Funct. Genom. (2), 310-313. (2001).
PDF |
| The importance of short structural motifs in protein structure
analysis; Diploma thesis at the Institute for Theoretical Chemistry
and Molecular Structural Biology, University of Vienna (1999). |
| |
| posters |
| iHOP: A gene network for navigating PubMed. Hoffmann, R.,
Valencia, A. ISMB(ECCB (2004) |
| Transcriptional control of epithelial cell polarity and
motility by TIS7. Wick, N., Vietor, I., Cotten, M., Bister,
M., Hoffmann, R., Beyer, A., Zatloukal, K., Huber, L. A. Poster
at the I.M.P. Recess (2000). |
| Analysis of TIS7 Effects on Epithelial Cell Morphology and
Gene Expression. Wick, N., Hoffmann, R., Vietor, I., Cotten,
M., Paiha, K., Huber, L. A. Poster at the I.M.P. Recess (1999). |
| |
| conferences |
| iHOP. E-BioSci/ORIEL Annual Workshop. Cambridge, UK (2004) |
| Navigating PubMed. E-BioSci/ORIEL Annual Workshop. Varenna,
Italy (2003) |
| Text discovery tools. Application to cancer research. Leuven,
Belgium (2002) |
| Mining the Biomedical Literature. ISMB tutorial (2001) |
| |
| languages |
| English, German, Spanish |
| programming
skills |
|
|
| object oriented languages
|
|
Java, C++ |
| data exchange |
|
XML, XSL |
| scripting languages |
|
HTML, JavaScript, Perl |
| database design |
|
Postgres, Oracle, SQL, jdbc |
| server-side |
|
JSP, XSP, Tomcat, Cocoon |
| operating systems |
|
Unix, Linux, win |
| statistical analysis |
|
R, spss, splus |
|
|
