José María Fernández González

Hello!! I was born on Málaga in 1975, and I am from there. I am a Computer Scientist since 1999 (Ingeniero en Informática, Universidad de Málaga), and now I'm working on the Protein Design Group from the CNB. Currently, I'm working on automatic annotation with Federico Abascal.

Software

• BLAST² ISS Server is a web interface to work with the ISS (Intermediate Sequence Searches) program developed by Federico Abascal and me.
• SDT2SQL v4.2. A tool to create SQL definitions files from an ERD or SDT file. Currently, the files generated are compatible with PostgreSQL and Oracle. SDT and ERD formats are related with ERTOOLS, a set of tools to build a SQL relational database from an entity-relationship diagram.
• ORFand^DB, an automated (and complex) system which will be able to annotate new sequences from the scratch ... (under development!!!).

Biology

• A Bioinformatics Blog I'm writing (spanish)
• Biochemical Pathways map.
• Another Biochemical Pathways map.
• SRS 6 at EBI.
• SRS 5 at EMBL-Heidelberg.

Other things...

• OpenMP, the possible tomorrow's standard for parallel computing with general purpose languages.
• A listing of Parallel Computing sites.
• CLIPS 6.1, is a shell system that was initially developed at NASA, which is used to build expert systems. Some examples of CLIPS files can be found at this address.
• FuzzyCLIPS is an enhanced version of CLIPS that supports fuzzy logic.
• This link is a first guide for the tunable Solaris kernel parameters. You'll need them if you are fine-tuning a DBMS!!! (more Solaris links! and more! and more! and more!)
• Following with databases, one of the best relational database management system is PostgreSQL, and even it's free! (additional links to PostgreSQL performance tuning and online replica 1,2 of Postgres' databases).
• All you wanted to know about hardware (wires, connectors, circuits, etc...) and today is too difficult to find: Hardware Book.
• SCSI Info Central, where you'll find lots of answers about SCSI (standards, wires, drives, etc...)
• If a you are a newbie on the Internet, you should read this guide (other mirrors/guides: 1, 2, 3, 4). You can learn some useful things with it/them!!!
• Don't you find the algorithm you need? Is your program too slow? You can find what you daren't ask about algorithms in this repository.
• extremeprogramming.org, other way of programming.
• Business world and free software, a real experience: (1^st part) (2^nd part).
• Links to SQL tutorials: 1, 2, 3, 4
• Links related with CD creation/burning: 1, 2, 3, 4 (DVD 1)
• The last (but not the least important), my personal homepage is here.