MARTIN KRALLINGER - PUBLICATIONS

  • M. Krallinger and A. Valencia. Mining information on protein function from text. In Bioinformatics: From Genomes to Therapies (2nd edition), chapter 35, VCH-Wiley, submitted.
    [ URL ][ BIBTEX ][ PUBL ] [ ABS ]

  • M. Krallinger and A. Valencia. Text mining and information retrieval services for Molecular Biology. Genome Biology, 6 (7), 224 (2005).
    [ PubMed ][ PDF ][ URL ][ BIBTEX ][ PUBL ] [ ABS ]


  • R. Hoffmann, M. Krallinger, E. Andres, J. Tamames, C. Blaschke and A. Valencia. Text Mining for Metabolic Pathways, Signaling Cascades, and Protein Networks. Science STKE 283, pe21 (2005).
    [ PubMed ][ PDF ][ URL ][ BIBTEX ][ PUBL ] [ ABS ]

  • C. Blaschke, E.A. Leon, M. Krallinger and A. Valencia. Evaluation of BioCreAtIvE assessment of task 2. BMC Bioinformatics 6, S16 (2005).
    [ PubMed ][ PDF ][ URL ][ BIBTEX ][ PUBL ] [ ABS ]


  • M. Krallinger, R. Alonso-Allende Erhadt and A. Valencia. Text-mining approaches in molecular biology and biomedicine. Drug Discovery Today 10, 439-445 (2005).
    [ PubMed ][ PDF ][ URL ][ PUBL ][ BIBTEX ] [ ABS ]


  • M. Krallinger, M. Padron and A. Valencia. A sentence sliding window approach to extract protein annotations from biomedical articles. BMC Bioinformatics 6, S19 (2005).
    [ PubMed ][ PDF ][ URL ][ BIBTEX ][ PUBL ] [ ABS ]

  • M. Krallinger and A. Valencia. Applications of Text Mining in Molecular Biology, from name recognition to Protein interaction maps. In Data Analysis and Visualization in Genomics and Proteomics, chapter 4, Wiley.
    [ URL ][ PUBL ][ BIBTEX ] [ ABS ]


  • M. Krallinger, M. Padron, C. Blaschke and A. Valencia. Assessing the correlation between contextual patterns and biological entity tagging. In Proceedings of COLING-NLPBA 2004, 36-43, (2004).
    [     PDF ][ URL ][ BIBTEX ] [ ABS ]

  • M. Krallinger, and M. Padron. Prediction of GO annotation by combining entity specific sentence sliding window profiles. In Proceedings of the BioCreative Challenge Evaluation Workshop 2004, (2004).
    [ PDF ][ URL ][ BIBTEX ][ ABS ]


  • M. Krallinger. Comparative analysis and prediction of transmembrane protein segments and signal peptides. Diplomarbeit, University of Salzburg - Master Thesis/Diplomarbeit, (2002).
    [PDF] [URL] [BIBTEX] [ ABS ]


    • LEGEND:
    [PubMed] : link to corresponding entry of the PubMed database of biomedical literture.
    [PDF] : link to the file of the article in pdf format.
    [PS] : link to the file of the article in ps format.
    [URL] : link to the online version of the article.
    [BIBTEX] : Link to the reference of the article in bibtex format.
    [PUBL] : link to the publisher page.
    [ABS] : link to the abstract of this publication.
 
     




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