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text mining and NLP in the biomedical domain. A commented list of articles will soon be available, with a brief summary of those papers. You can download the references_v03oct2005.bib file containing text mining references in bibtex format (version from the 23 of August 2005). Links to Biomedical Text mining reference collections are provided within the links section of my homepage. If your publication is not listed here, and you think it is relevant to this research field, please contact me: martink@cnb.uam.es. PDG members can check the PDG-internal query interface to Bio-NLP reference database (restricted access area!).
@Article{ Yu.Hatzivassiloglou.ea:2002,
author = {Yu,H. and Hatzivassiloglou,V. and Friedman,C. and Rzhetsky,A. and Wilbur,W.J.},
title = {{Automatic Extraction of Gene and Protein Synonyms from MEDLINE and Journal Articles.}},
journal = {Proc AMIA Symp.},
pages = {919--23},
year = {2002},
}
@Article{ Rzhetsky.Koike.ea:2000,
author = {Rzhetsky,A. and Koike,T. and Kalachikov,S. and Gomez,S.M. and Krauthammer,M. and Kaplan,S.H. and Kra,P. and Russo,J.J. and Friedman,C.},
title = {{A knowledge model for analysis and simulation of regulatory networks.}},
journal = {Bioinformatics},
volume = 16,
pages = {1120--1128},
year = {2000},
}
@Article{ MacCallum.Kelley.Sternberg:2000,
author = {MacCallum,R.M. and Kelley,L.A. and Sternberg,M.J.},
title = {{SAWTED: structure assignment with text description--enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons.}},
journal = {Bioinformatics},
volume = 16,
pages = {125--129},
year = {2000},
}
@Article{ Masys.Welsh.ea:2001,
author = {Masys,D.R. and Welsh,J.B. Lynn Fink,J. and Gribskov,M. and Klacansky,I. and Corbeil,J.},
title = {{Use of keyword hierarchies to interpret gene expression patterns.}},
journal = {Bioinformatics},
volume = 17,
pages = {319--326},
year = {2001},
}
@Article{ Kretschmann.Fleischmann.ea:2001,
author = {Kretschmann,E. and Fleischmann,W. and Apweiler,R.},
title = {{Use of keyword hierarchies to interpret gene expression patterns.}},
journal = {Bioinformatics},
volume = 17,
pages = {920--926},
year = {2001},
}
@Article{ Andrade.Valencia:1998,
author = {Andrade,M.A. and Valencia,A.},
title = {{Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families.}},
journal = {Bioinformatics},
volume = 14,
pages = {600--607},
year = {1998},
}
@Article{ Friedman:2000,
author = {Friedman,C.},
title = {{A broad-coverage natural language processing system.}},
journal = {Proc AMIA Symp},
pages = {270--274},
year = {2000},
}
@Article{ Oliveros.Blaschke.ea:2000,
author = {Oliveros,J.C. and Blaschke,C. and Herrero,J. and Dopazo,J. and Valencia,A.},
title = {{Expression profiles and biological function.}},
journal = {Genome Inform Ser Workshop Genome Inform},
volume = 11,
pages = {106--117},
year = {2000},
}
@Article{ Proux.Rechenmann.ea:1998,
author = {Proux,D. and Rechenmann,F. and Julliard,L. and Pillet,V.V. and Jacq,B.},
title = {{Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction.}},
journal = {Genome Inform Ser Workshop Genome Inform},
volume = 9,
pages = {72--80},
year = {1998},
}
@Article{ Proux.Rechenmann:2000,
author = {Proux,D. and Rechenmann,F. and Julliard,L.},
title = {{A pragmatic information extraction strategy for gathering data on genetic interactions.}},
journal = {Proc Int Conf Intell Syst Mol Biol},
volume = 8,
pages = {279--285},
year = {2000},
}
@Article{ Ashburner.Ball.Blake.ea:2000,
author = {Ashburner,M. and Ball,C.A. and Blake,J.A. and Botstein,D. and Butler,H. and Cherry,J.M. and Davis,A.P. and Dolinski,K. and Dwight,S.S. and Eppig,J.T. and Harris,M.A. and Hill,D.P. and Issel-Tarver,L. and Kasarskis,A. and Lewis,S. and Matese,J.C. and Richardson,J.E. and Ringwald,M. and Rubin,G.M. and Sherlock,G.},
title = {{Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.}},
journal = {Nat Genet},
volume = 25,
pages = {25--29},
year = {2000},
url = "http://www.geneontology.org",
}
@Article{ Baldi.Chauvin.Hunkapiller.ea:1994,
author = {Baldi,P. andChauvin,Y. and Hunkapiller,T. and McClure,M.A.},
title = {{Hidden Markov models of biological primary sequence information.}},
journal = {Proc Natl Acad Sci U S A},
volume = 91,
pages = {1059--1063},
year = {1994},
}
@Article{ Humphreys.Demetriou.Gaizauskas:2000,
author = {Humphreys,K. and Demetriou,G. and Gaizauskas,R.},
title = {{Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures.}},
journal = {Pac Symp Biocomput},
pages = {505--516},
year = {2000},
}
@Article{ Ono.Hishigaki.ea:2001,
author = {Ono,T. and Hishigaki,H. and Tanigami,A. and Takagi,T.},
title = {{Automated extraction of information on protein-protein interactions from the biological literature.}},
journal = {Bioinformatics},
volume = 17,
pages = {155--161},
year = {2001},
}
@Article{ Yoshida.Fukuda.Takagi:2000,
author = {Yoshida,M. and Fukuda,K. and Takagi,T.},
title = {{PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary.}},
journal = {Bioinformatics},
volume = 16,
pages = {169--175},
year = {2000},
}
@Article{ Zanzoni.Montecchi-Palazzi.ea:2002,
author = {Zanzoni,A. Montecchi-Palazzi,L. and Quondam,M. and Ausiello,G. and Helmer-Citterich,M. and Cesareni,G.},
title = {{MINT: a Molecular INTeraction database.}},
journal = {FEBS Lett},
volume = 513,
pages = {135--140},
year = {2002},
}
@Article{ Wheeler.Church.Lash.ea:2002,
author = {Wheeler,D.L. and Church,D.M. and Lash,A.E. and Leipe,D.D. and Madden,T.L. and Pontius,J.U. and Schuler,G.D. and Schriml,L.M. and Tatusova,T.A. and Wagner,L. and Rapp,B.A.},
title = {{Database resources of the National Center for Biotechnology Information: 2002 update.}},
journal = {Nucleic Acids Res},
volume = 30,
pages = {13--16},
year = {2002},
}
@Article{ Aronson.Bodenreider.ea:2000,
author = {Aronson,A.R. and Bodenreider,O. and Chang,H.F. and Humphrey,S.M. and Mork,J.G. and Nelson,S.J. and Rindflesch,T.C. and Wilbur,W.J.},
title = {{The NLM Indexing Initiative.}},
journal = {Proc AMIA Symp},
pages = {17--21},
year = {2000},
}
@Article{ Hishiki.Collier.ea:1998,
author = {Hishiki,T. and Collier,N. and Nobata,C. and Okazaki-Ohta,T. and Ogata,N. and Sekimizu,T. and Steiner,R. and Park,H.S. and Tsujii,J.},
title = {{Developing NLP Tools for Genome Informatics: An Information Extraction Perspective.}},
journal = {Genome Inform Ser Workshop Genome Inform},
volume = 9,
pages = {81--90},
year = {1998},
}
@Article{ Zweigenbaum.Jacquemart.ea:2001,
author = {Zweigenbaum,P. and Jacquemart,P. and Grabar,N. and Habert,B.},
title = {{Building a text corpus for representing the variety of medical language.}},
journal = {Medinfo},
volume = 10,
pages = {290--294},
year = {2001},
}
@Article{ Barrows.Busuioc.Friedman:2000,
author = {Barrows,Jr.R.C. and Busuioc,M. and Friedman,C.},
title = {{Limited parsing of notational text visit notes: ad-hoc vs. NLP approaches.}},
journal = {Proc AMIA Symp},
pages = {51--55},
year = {2000},
}
@Article{ Marcus:1995,
author = {Marcus,M.},
title = {{New trends in natural language processing: statistical natural language processing.}},
journal = {Proc Natl Acad Sci U S A},
volume = 92,
pages = {10052--10059},
year = {1995},
}
@Article{ Baud:1998,
author = {Baud,R.},
title = {{Present and future trends with NLP.}},
journal = {Int J Med Inf},
volume = 52,
pages = {133--139},
year = {1998},
}
@Article{ Ng.Wong:1999,
author = {Ng,S.K. and Wong,M.},
title = {{Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts.}},
journal = {Genome Inform Ser Workshop Genome Inform},
volume = 10,
pages = {104--112},
year = {1999},
}
@Article{ Weeber.Klein.ea:2000,
author = {Weeber M, Klein H, Aronson AR, Mork JG, de Jong-van den Berg LT, Vos R},
title = {{Text-based discovery in biomedicine: the architecture of the DAD-system.}},
journal = {Proc AMIA Symp},
pages = {903-907},
year = {2000},
}
@Article{ Hatzivassiloglou.Duboue.Rzhetsky:2001,
author = {Hatzivassiloglou,V. and Duboue,P.A. and Rzhetsky,A.},
title = {{Disambiguating proteins, genes, and RNA in text: a machine learning approach.}},
journal = {Bioinformatics},
volume = 17,
pages = {97--106},
year = {2001},
}
@Article{ Cherry.Adler.ea:1998,
author = {Cherry,J.M. and Adler,C. and Ball,C. and Chervitz,S.A. and Dwight,S.S. and Hester,E.T. and Jia,Y. and Juvik,G. and Roe,T. and Schroeder,M. and Weng,S. and Botstein,D.},
title = {{SGD: Saccharomyces Genome Database.}},
journal = {Nucleic Acids Res},
volume = 26,
pages = {73--79},
year = {1998},
}
@Article{ Dwight.Harris.Dolinski.ea:2002,
author = {Dwight,S.S. and Harris,M.A. and Dolinski,K. and Ball,C.A. and Binkley,G. and Christie,K.R. and Fisk,D.G. and Issel-Tarver.L. and Schroeder,M. and Sherlock,G. and Sethuraman,A. and Weng,S. and Botstein,D. and Cherry,J.M.},
title = {{Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).}},
journal = {Nucleic Acids Res},
volume = 30,
pages = {69--72},
year = {2002},
}
@Article{ Tanabe.Wilbur:2002,
author = {Tanabe,L. and Wilbur,W.J.},
title = {{Tagging gene and protein names in biomedical text.}},
journal = {Bioinformatics},
volume = 18,
pages = {1124--1132},
year = {2002},
}
@Article{ Schuler:1997,
author = {Schuler,G.D.},
title = {{Pieces of the puzzle: expressed sequence tags and the catalog of human genes.}},
journal = {J Mol Med},
volume = 75,
pages = {694--698},
year = {1997},
}
@Article{ Chaussabel.Sher:2002,
author = {Chaussabel,D. and Sher,A.},
title = {{Mining microarray expression data by literature profiling.}},
journal = {Genome Biol},
volume = 3,
pages = {RESEARCH0055},
year = {2002},
}
@Article{ Srinivasan.ea:2002,
author = {Srinivasan,S. and Rindflesch,T.C. and Hole,W.T. and Aronson,A.R. and Mork,J.G.},
title = {{Finding UMLS Metathesaurus Concepts in MEDLINE.}},
journal = {Proc AMIA Symp},
pages = {727--731},
year = {2002},
}
@Article{ Srinivasan.Rindflesch:2002,
author = {Srinivasan,P. and Rindflesch,T.},
title = {{Exploring Text Mining from MEDLINE.}},
journal = {Proc AMIA Symp},
pages = {722--726},
year = {2002},
}
@Article{ Sarkar.Rindflesch:2002,
author = {Sarkar,I.N. and Rindflesch,T.C.},
title = {{Discovering protein similarity using natural language processing.}},
journal = {Proc AMIA Symp},
pages = {677--81},
year = {2002},
}
@Article{ Bodenreider.Burgun.ea:2002,
author = {Bodenreider,O. and Burgun,A. and Rindflesch,T.C.},
title = {{Assessing the consistency of a biomedical terminology through lexical knowledge.}},
journal = {Int J Med Inf},
volume = 67,
pages = {85--95},
year = {2002},
}
@Article{ Eisen.ea:1998,
author = {Eisen,M.B. and Spellman,P.T. and Brown,P.O. and Botstein,D.},
title = {{Cluster analysis and display of genome-wide expression patterns.}},
journal = {Proc Natl Acad Sci U S A},
volume = 95,
pages = {14863--14868},
year = {1998},
}
@Article{ Chang.Raychaudhuri.Altman:2001,
author = {Chang,J.T. and Raychaudhuri,S. and Altman,R.B.},
title = {{Including biological literature improves homology search.}},
journal = {Pac Symp Biocomput},
pages = {374--383},
year = {2001},
}
@Article{ Krauthammer.ea:2000,
author = {Krauthammer,M. and Rzhetsky,A. and Morozov,P. and Friedman,C.},
title = {{Using BLAST for identifying gene and protein names in journal articles.}},
journal = {Gene},
volume = 259,
pages = {245--252},
year = {2000},
}
@Article{ Hermjakob.Fleischmann.ea:1999,
author = {Hermjakob,H. and Fleischmann,W. and Apweiler,R.},
title = {{Swissknife - 'lazy parsing' of SWISS-PROT entries.}},
journal = {Bioinformatics},
volume = 15,
pages = {771--772},
year = {1999},
}
@Article{ Fleischmann.Moller.ea:1999,
author = {Fleischmann,W. and Moller,S. and Gateau,A. and Apweiler,R.},
title = {{A novel method for automatic functional annotation of proteins.}},
journal = {Bioinformatics},
volume = 15,
pages = {228--233},
year = {1999},
}
@Article{ Raychaudhuri.Chang.ea:2002,
author = {Raychaudhuri,S. and Chang,J.T. and Sutphin,P.D. and Altman,R.B.},
title = {{Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.}},
journal = {Genome Res},
volume = 12,
pages = {203--214},
year = {2002},
}
@Article{ Tanabe.Scherf.Smith.ea:1999,
author = {Tanabe,L. and Scherf,U. and Smith,L.H. and Lee,J.K. and Hunter,L. and Weinstein,J.N.},
title = {{MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling.}},
journal = {Biotechniques},
volume = 27,
pages = {1210--1217},
year = {1999},
}
@Article{ Marcotte.Xenarios.ea:2001,
author = {Marcotte,E.M. and Xenarios,I. and Eisenberg,D.},
title = {{Mining literature for protein-protein interactions.}},
journal = {Bioinformatics},
volume = 17,
pages = {259--363},
year = {2001},
}
@Article{ Rindflesch.Hunter.ea:1999,
author = {Rindflesch,T.C. and Hunter,L. and Aronson,A.R.},
title = {{Mining molecular binding terminology from biomedical text}},
journal = {Proc AMIA Symp},
pages = {127--131},
year = {1999},
}
@Article{ Rindflesch.Tanabe.ea:2000,
author = {Rindflesch,T.C. and Tanabe,L. and Weinstein,J.N. and Hunter,L.},
title = {{EDGAR: extraction of drugs, genes and relations from the biomedical literature.}},
journal = {Pac Symp Biocomput},
pages = {517--528},
year = {2000},
}
@Article{ Raychaudhuri.Schutze.Altman:2002,
author = {Raychaudhuri,S. and Schutze,H. and Altman,R.B.},
title = {{Using text analysis to identify functionally coherent gene groups.}},
journal = {Genome Res},
volume = 12,
pages = {1582--1590},
year = {2002},
}
@Article{ Jenssen.Laegreid.ea:2001,
author = {Jenssen,TK. and Laegreid,A. and Komorowski,J. and Hovig,E.},
title = {{A literature network of human genes for high-throughput analysis of gene expression.}},
journal = {Nat Genet},
volume = 28,
pages = {21--28},
year = {2001},
}
@Article{ Baldi.Brunak.ea:2000,
author = {Baldi,P. and Brunak,S. and Chauvin,Y. and Andersen,C.A. and Nielsen,H.},
title = {{Assessing the accuracy of prediction algorithms for classification: an overview.}},
journal = {Bioinformatics},
volume = 16,
pages = {421--424},
year = {2000},
}
@Article{ Costanzo.Hogan.Cusick.ea:2000,
author = {Costanzo,M.C. and Hogan,J.D. and Cusick,M.E. and Davis,B.P. and Fancher,A.M. and Hodges,P.E. and Kondu,P. and Lengieza,C. and Lew-Smith,J.E. and Lingner,C. Roberg-Perez,K.J. and Tillberg,M. and Brooks,J.E. and Garrels,J.I.},
title = {{The yeast proteome database (YPD) and Caenorhabditis elegans proteome database (WormPD): comprehensive resources for the organization and comparison of model organism protein information.}},
journal = {Nucleic Acids Res},
volume = 28,
pages = {73--76},
year = {2000},
}
@Article{ Nair.Rost:2002,
author = {Nair,R. and Rost,B.},
title = {{Inferring sub-cellular localization through automated lexical analysis.}},
journal = {Bioinformatics},
volume = 8,
pages = {S78--s86},
year = {2002},
}
@Article{ NairR.RostB:2002,
author = {Nair,R. and Rost,B.},
title = {{Sequence conserved for subcellular localization.}},
journal = {Protein Sci},
volume = 11,
pages = {2836--2847},
year = {2002},
}
@Article{ Cokol.Nair.Rost:2000,
author = {Cokol,M. and Nair,R. and Rost,B.},
title = {{Finding nuclear localization signals.}},
journal = {EMBO Rep},
volume = 1,
pages = {411--415},
year = {2000},
}
@Article{ Tao.Leibel:2002,
author = {Tao,Y.C. and Leibel,R.L.},
title = {{Identifying functional relationships among human genes by systematic analysis of biological literature.}},
journal = {BMC Bioinformatics},
volume = 7,
pages = {3--16},
year = {2002},
}
@Article{ Altman.Raychaudhuri:2001,
author = {Altman,R.B. and Raychaudhuri,S.},
title = {{Whole-genome expression analysis: challenges beyond clustering.}},
journal = {Curr Opin Struct Biol},
volume = 11,
pages = {340--347},
year = {2001},
}
@Article{ Stapley.Benoit:2000,
author = {Stapley,B.J. and Benoit,G.},
title = {{Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts.}},
journal = {Pac Symp Biocomput},
pages = {529--540},
year = {2000},
}
@Article{ Hill.Blake.ea:2002,
author = {Hill,D.P. and Blake,J.A. and Richardson,J.E. and Ringwald,M.},
title = {{Extension and Integration of the Gene Ontology (GO): Combining GO Vocabularies With External Vocabularies.}},
journal = {Genome Res},
volume = 12,
pages = {1982--1991},
year = {2002},
}
@Article{ Glenisson.Antal.ea:2003,
author = {Glenisson,P. and Antal,P. and Mathys,J. Moreau,Y. De Moor,B.},
title = {{Evaluation of the Vector Space Representation in Text-Based Gene Clustering.}},
journal = {Pac Symp Biocomput},
pages = {391--402},
year = {2003},
}
@Article{ Hanisch.Fluck.Mevissen.ea:2003,
author = {Hanisch,D. and Fluck,J. and Mevissen,H.T. and Zimmer,R},
title = {{Playing Biology's Name Game: Identifying Protein Names in Scientific Text.}},
journal = {Pac Symp Biocomput},
pages = {403--414},
year = 2003,
}
@Article{ Liu.Friedman:2003,
author = {Liu,H and Friedman,C.},
title = {{Mining Terminological Knowledge in Large Biomedical Corpora.}},
journal = {Pac Symp Biocomput},
pages = {415--26},
year = 2003,
}
@Article{ Narayanaswamy.Ravikumar.ea:2003,
author = {Narayanaswamy,M. and Ravikumar,K.E. and Vijay-Shanker,K.},
title = {{A Biological Named Entity Recognizer.}},
journal = {Pac Symp Biocomput},
pages = {427--438},
year = 2003,
}
@Article{ sarkar.cantor.gelman.ea:2003,
author = {Sarkar,I.N. and Cantor,M.N. and Gelman,R. and Hartel,F. and Lussier,Y.A.},
title = {{Linking biomedical language information and knowledge resources in the 21st century: go and umls.}},
journal = {Pac Symp Biocomput},
pages = {439--450},
year = 2003,
}
@Article{ Schwartz.Hearst:2003,
author = {Schwartz,A.S. and Hearst,M.A.},
title = {{Identifying Abbreviation Definitions in Biomedical Text.}},
journal = {Pac Symp Biocomput},
pages = {451--462},
year = 2003,
}
@Article{ Kazama.Makino.ea:2002,
author = {Kazama,J. and Makino,T. and Ohta,Y. and Tsujii,J.},
title = {{Tuning Support Vector Machines for Biomedical Named Entity Recognition}},
journal = {Proceedings of the Natural Language Processing in the Biomedical Domain},
year = 2002,
}
@Article{ Nobata.Collier.ea:1999,
author = {Nobata,C. and Collier,N. and Tsujii,J.},
title = {{Automatic term identification and classification in biology texts.}},
journal = {Proceedings of the Natural Language Pacific Rim Symposium.},
pages = {369--375},
year = 1999,
}
@Article{ Rindflesch.Hunter.Aronson:1999,
author = {Rindflesch,T. and and Hunter,L. and Aronson,A.},
title = {{Mining molecular binding terminology from biomedical text.}},
journal = {Proceedings of the AMIA '99 Annual Symposium.},
pages = {127--131},
year = 1999,
}
@Article{ Fukuda.Tsunoda.ea:1998,
author = {Fukuda,K. and Tsunoda,T. and Tamura,A. and Takagi,T.},
title = {{Toward information extraction: identifying protein names from biological papers.}},
journal = {Pac Symp Biocomput},
pages = {707--718},
year = 1998,
}
@Article{ Humphreys.Lindberg.ea:1998,
author = {Humphreys,B.L. and Lindberg,D.A. and Schoolman,H.M. and Barnett,G.O.},
title = {{The Unified Medical Language System: an informatics research collaboration.}},
journal = {J Am Med Inform Assoc},
volume = 5,
pages = {1--11},
year = 1998,
}
@Article{ Hoffmann.Valencia:2003,
author = {Hoffmann,R. and Valencia,A.},
title = {{Life cycles of successful genes.}},
journal = {Trends Genet},
volume = 19,
pages = {79--81},
year = {2003},
}
@Article{ Hayashizaki:2003,
author = {Hayashizaki,Y.},
title = {{RIKEN mouse genome encyclopedia.}},
journal = {Mech Ageing Dev},
volume = 124,
pages = {93--102},
year = {2003},
}
@Article{ Brayton.Justice.Montgomery:2001,
author = {Brayton,C. and Justice,M. and Montgomery,C.A.},
title = {{Evaluating mutant mice: anatomic pathology.}},
journal = {Vet Pathol},
volume = 38,
pages = {1--19},
year = {2001},
}
@Article{ Liu.Johnson.Friedman:2002,
author = {Liu,H. and Johnson,S.B. and Friedman,C.},
title = {{Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS.}},
journal = {J Am Med Inform Assoc},
volume = 9,
pages = {621--636},
year = {2002},
}
@Article{ Boeckmann.Bairoch.ea:2003,
author = {Boeckmann,B. and Bairoch,A. and Apweiler,R. and Blatter,M.C. and Estreicher,A. and Gasteiger,E. and Martin,M.J. and Michoud,K. and O'Donovan,C. and Phan,I. and Pilbout,S. and Schneider,M.},
title = {{The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.}},
journal = {Nucleic Acids Res},
volume = 31,
pages = {365--370},
year = {2003},
}
@Article{ Ursing.Enckevort.Leunissen.Siezen:2002,
author = {Ursing,B.M. and van Enckevort,F.H. and Leunissen,J.A. and Siezen,R.J.},
title = {{EXProt: a database for proteins with an experimentally verified function.}},
journal = {Nucleic Acids Res},
volume = 30,
pages = {50--51},
year = {2002},
}
@Article{ Geschwinde.Schoenig:2002,
author = {Geschwinde,E. and Schoenig,H.J.},
title = {{PostgreSQL, Developer's Handbook.}},
journal = {SAMS},
year = {2002},
}
@Article{ Stonebraker.Kemnitz:1991,
author = {Stonebraker,M. and Kemnitz,G.},
title = {{The POSTGRES Next-Generation Database Management System.}},
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volume = 34,
pages = {78--92},
year = {1991},
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title = {{MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms.}},
journal = { Bioinformatics},
volume = {21},
pages = {3324-3326},
year = {2005},
}
@Article{ Huang.ea:2004,
author = { Huang,M. and Zhu,X. and Hao,Y. and Payan,D.G. and Qu,K. and Li,M.},
title = {{Discovering patterns to extract protein-protein interactions from full texts.}},
journal = { Bioinformatics},
volume = {20},
pages = {3604--3612},
year = {2004},
}
@article{ Wang.ea:2005,
author = {Wang,J.F. and Li,Z.R. and Cai,C.Z. and Chen,Y.Z.},
title = {{Assessment of approximate string matching in a biomedical text retrieval problem.}},
journal = {Comput Biol Med.},
volume = {35},
pages = {717--724},
year = {2005},
}
@article{ Mendonca.ea:2005,
author = {Mendonca,E.A. and Haas,J. and Shagina,L. and Larson,E. and Friedman,C.},
title = {{Extracting information on pneumonia in infants using natural language processing of radiology reports.}},
journal = {J Biomed Inform.},
volume = {38},
pages = {314--321},
year = {2005},
}
@Article{ Mitchell.ea:2005,
author = { Mitchell,A.L. and Divoli, A. and Kim,J.H. and Hilario,M. and Selimas,I. and Attwood,T.K. },
title = {{METIS: multiple extraction techniques for informative sentences.}},
journal = { Bioinformatics},,
year = {2005},
}
@Article{ Divoli.Attwood:2005,
author = { Divoli,A. and Attwood,T.K.},
title = {{BioIE: extracting informative sentences from the biomedical literature.}},
journal = { Bioinformatics},
volume = {21},
pages = {2138--2139},
year = {2005},
}
@Article{ Smith.ea:2004,
author = { Smith,L. and Rindflesch,T. and Wilbur,W.J.},
title = {{MedPost: a part-of-speech tagger for bioMedical text.}},
journal = { Bioinformatics},
volume = {20},
pages = {2320--2321},
year = {2004},
}
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