PlotCorr
Support for this program has been . We are not developing this program any more.
You can still download old versions, and we will do our best to help with the problems you might have using it.
This affects mainly the graphical interface. It will not work on most new operative systems. We are not working on it any more. But the basic command line programs for calculating correlations should work. If not, we can easily compile them for new operative systems.
Plotcorr (F. Pazos & O. Olmea)
Prediction of residue contacts in proteins using correlated mutations (Including a X
graphical interface).
The program interactively shows a representation of the protein with information like: Predicted residue contacts
according to "correlated mutations", secondary structure prediction, residue accesibility prediction, residue variability
and any residue scale (beta-sheet propension, hidrophobicity, ...).
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Papers.
- Gobel U, Sander C, Schneider R, Valencia A. (1994). Correlated mutations and residue contacts in proteins.
Proteins. 1994 18(4):309-317.
- Pazos, F., Olmea, O. and Valencia, A. (1997). A graphical interface for correlated
mutations and other structure prediction methods.
CABIOS. 13(3):319-321.
[HTML]
[RTF]
[PDF]
- Olmea O, Valencia A (1997) Improving contact predictions by the combination of
correlated mutations and other sources of sequence information.
Folding & Design 2,
S25-S32.
[HTML]
[RTF]
- View program documentation.
- View graphical interface (179 K jpg).
- Working with two proteins (inter-protein correlated mutations):
Plotcorr has some un-documented features for working with more than one protein (for predicting contacts between two proteins, instead of internal contacts). Take a look at this short document which explains some of these features.
DOWNLOAD the program
[FTP]
WARNING:
The program is free licensed for academic users.
Private users please contact Dr. Alfonso Valencia (valencia@cnb.uam.es).
F. Pazos pazos@gredos.cnb.uam.es &
O. Olmea olmea@gredos.cnb.uam.es
