Estructura de proteínas. Visualización.
Bases de datos de estructuras.
Paulino Gómez-Puertas (Centro de Astrobiología, Madrid).
VISUALIZADORES:
Rasmol: Programa de visualización de estructuras 3D.
Chime: Programa de visualización de estructuras 3D.
Swiss-PdbViewer. Homology modeling & protein visualization
software:
Algunos ejemplos de estructuras para visualizar:
Bases de datos de estructuras.
ASTRAL
Chandonia, J. M.1, Walker, N.2, Lo Conte, L.3,
Koehl, P.4, Levitt, M.4, Brenner, S. E.5
Sequences of domains of known
structure, selected subsets, and sequence-structure correspondences
database
summary
BioMagResBank
NMR spectroscopic data from
proteins, peptides, and nucleic acids
database
summary
CE
CE: A Resource to Compute
and Review 3-D Protein Structure Alignments
database
summary
CSD
Crystal structure information
for organic and metal organic compounds.
database
summary
Database of Macromolecular Movements
Descriptions of protein and
macromolecular motions, including movies
database
summary
Decoys 'R' Us
Computer-generated protein
conformations based on sequence data
database
summary
DSDBASE Vinayagam, A., Sowdhamini,
R.
GTOP
Large-scale genome projects
generate an unprecedented number of protein seq
database
summary
HSSP
Structural families and alignments;
structurarlly-conserved regions and domain architecture
database
summary
IMB Jena Image Library of Biological Macromolecules
Reichert, J., Suehnel, J.
Visualization and analysis
of three-dimensional biopolymer structures
database
summary
MMDB
All experimentally-determined
three-dimensional structures, linked to NCBI Entrez
database
summary
MODBASE
MODBASE (http://guitar.rockefeller.edu/modbase)
is a relational database of
database
summary
PALI Balaji, S.1,
Sujatha, S.1, Aruna, S.2, Mhatre, S.N.1,
Srinivasan, N.1
PASS2 Mallika, V., Bhaduri,
A., Sowdhamini, R.
PDB
Structure data determined
by X-ray crystallography and NMR
database
summary
PDB-REPRDB Noguchi, T.1,
Mikoshiba, M.2, Takahashi, A.2, Akiyama, Y.1
PRESAGE Smith, A.1,
Barken, D.1, Levitt, M.2, Brenner, S. E.1
Protein structures with experimental
and predictive annotations
database
summary
SCOP Lo Conte, L.1,
Brenner, S.E.2, Hubbard, T.J.P.3, Chothia, C.1,
Murzin, A.G.4
SCOR Klosterman, P. S.1,
Holbrook, S. R.2, Brenner, S. E.1
SUPERFAMILY Gough, J., Chothia,
C.