| Protein Design
Group.
Centro Nacional de Biotecnología (CNB - CSIC). Campus Universidad Autónoma de Madrid. Cantoblanco. 28049 Madrid. Spain. Phone:+34-91-585 46 69 Fax: +34-91-585 45 06 |
Ana Rojas Mendoza
e-mail: arojas@cnb.uam.es Last update: February, 2004 |
| CATH | database | Hierarchical classification of protein domain structures | - | |
|---|---|---|---|---|
| PDB | database | Structure data determined by X-ray crystallography and NMR | - | |
| SCOP | database | Structural Classification of Proteins | Lo Conte, L.1, Brenner, S.E.2, Hubbard, T.J.P.3, Chothia, C.1, Murzin, A.G.4 | |
| DALI | database | FSSP database | - |
| ASTRAL | database | Sequences of domains of known structure, selected subsets, and sequence-structure correspondences | Chandonia, J. M.1, Walker, N.2, Lo Conte, L.3, Koehl, P.4, Levitt, M.4, Brenner, S. E.5 | |
|---|---|---|---|---|
| BioImage | database | Searchable database of multidimensional biological images | - | |
| BioMagResBank | database | NMR spectroscopic data from proteins, peptides, and nucleic acids | - | |
| CSD | database | Crystal structure information for organic and metal organic compounds. | - | |
| Database of Macromolecular Movements | database | Descriptions of protein and macromolecular motions, including movies | - | |
| CKAAPs DB | database | Structurally-similar proteins with dissimilar sequences | - | |
| CE | database | CE: A Resource to Compute and Review 3-D Protein Structure Alignments | - | |
| Decoys 'R' Us | database | Computer-generated protein conformations based on sequence data | ||
| DSDBASE | database | Native and modeled disulfide bonds in proteins | - | |
| GTOP | database | Large-scale genome projects generate an unprecedented number of protein seq | - | |
| HIC-Up | database | Structures of small molecules (*hetero-compounds*) | - | |
| HSSP | database | Structural families and alignments; structurarlly-conserved regions and domain architecture | - | |
| IMB Jena Image Library of Biological Macromolecules | database | Visualization and analysis of three-dimensional biopolymer structures | Reichert, J., Suehnel, J. | |
| ISSD | database | Integrated sequence and structural information | - | |
| LPFC | database | Library of protein family core structures | ||
| MMDB | database | All experimentally-determined three-dimensional structures, linked to NCBI Entrez | - | |
| MODBASE | database | Relational database | - | |
| NDB | database | Nucleic acid-containing structures | - | |
| NTDB | database | Thermodynamic data for nucleic acids | - | |
| PALI | database | Phylogeny and alignment of homologous protein structures | Balaji, S.1,Sujatha, S.1, Aruna, S.2, Mhatre, S.N.1,Srinivasan, N.1 | |
| PASS2 | database | Protein structural superfamilies | Mallika, V., Bhaduri,A., Sowdhamini, R. | |
| PDB-REPRDB | database | Representative protein chains, based on PDB entries | Noguchi, T.1, Mikoshiba, M.2, Takahashi, A.2, Akiyama, Y.1 | |
| PDBsum | database | Summaries and analyses of PDB structures | - | |
| PRESAGE | database | Protein structures with experimental and predictive annotations | Smith, A.1, Barken, D.1, Levitt, M.2, Brenner, S. E.1 | |
| RESID | database | Protein structure modifications | - | |
| SCOR | database | RNA structural relationships | Klosterman, P. S.1, Holbrook, S. R.2, Brenner, S. E.1 | |
| SLoop | database | Classification of protein loops | - | |
| SUPERFAMILY | database | ssignments of proteins to structural superfamilies | Gough, J., Chothia, C. |