PROSITE
Database of protein families and domains

PROSITE is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs [More details / References / Disclaimer].

Release 17.43, of 13-Apr-2003 (contains 1183 documentation entries that describe 1621 different patterns, rules and profiles/matrices).

Access to PROSITE
in PROSITE by AC, ID or documentation text Prefix and append wildcard '*' to words.	Browse PROSITE documentation entries Search by author Search by citation Search by description Search by full text search SRS - Sequence Retrieval System Download by FTP

Tools for PROSITE

Scan PROSITE patterns, profiles and rules with a Swiss-Prot/TrEMBL AC, ID or paste your own sequence in the box below (for more options, use the ScanProsite form):

Exclude patterns with a high probability of occurrence

ScanProsite - Scan a sequence against PROSITE or a pattern against Swiss-Prot or new PDB and visualize matches on structures
MotifScan - Scan a sequence against the profile entries in PROSITE and Pfam
InterProScan - Scan a sequence against all the motif databases in InterPro
ps_scan - Perl program to scan PROSITE locally
PRATT - Interactively generates conserved patterns from a series of unaligned proteins
Other pattern and profile search tools

Tools for PROSITE
Scan PROSITE patterns, profiles and rules with a Swiss-Prot/TrEMBL AC, ID or paste your own sequence in the box below (for more options, use the ScanProsite form): Exclude patterns with a high probability of occurrence	ScanProsite - Scan a sequence against PROSITE or a pattern against Swiss-Prot or PDB and visualize matches on structures MotifScan - Scan a sequence against the profile entries in PROSITE and Pfam InterProScan - Scan a sequence against all the motif databases in InterPro ps_scan - Perl program to scan PROSITE locally PRATT - Interactively generates conserved patterns from a series of unaligned proteins Other pattern and profile search tools

Documents

PROSITE user manual
PROSITE release notes
Document describing the syntax of profiles in PROSITE
List of abbreviations for journals cited
List of on-line experts
The optimal way to develop patterns

Documents
PROSITE user manual PROSITE release notes Document describing the syntax of profiles in PROSITE List of abbreviations for journals cited List of on-line experts The optimal way to develop patterns

Access to servers offering related services

InterPro - Integrated Resources of Proteins Domains and Functional Sites

BLOCKS - BLOCKS db
Pfam - Protein families db (HMM derived) [Mirror at St. Louis (USA)]
PRINTS - Protein Motif fingerprint db
ProDom - Protein domain db (Automatically generated)
PROTOMAP - An automatic hierarchical classification of Swiss-Prot proteins
SBASE - SBASE domain db
SMART - Simple Modular Architecture Research Tool
TIGRFAMs - TIGR protein families db

Access to servers offering related services
InterPro - Integrated Resources of Proteins Domains and Functional Sites BLOCKS - BLOCKS db Pfam - Protein families db (HMM derived) [Mirror at St. Louis (USA)] PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of Swiss-Prot proteins SBASE - SBASE domain db SMART - Simple Modular Architecture Research Tool TIGRFAMs - TIGR protein families db

Access to other databases and tools on ExPASy

Swiss-Prot
SWISS-2DPAGE
SWISS-3DIMAGE

SWISS-MODEL Repository
ENZYME
CD40Lbase

SeqAnalRef

Proteomics tools

Access to other databases and tools on ExPASy
Swiss-Prot SWISS-2DPAGE SWISS-3DIMAGE	SWISS-MODEL Repository ENZYME CD40Lbase	SeqAnalRef Proteomics tools

Last modified 13/Apr/2003 by ELG

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PROSITE Database of protein families and domains

Last modified 13/Apr/2003 by ELG

PROSITE
Database of protein families and domains