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Swiss-Prot

How to create HTML links to services on ExPASy

Databases
Swiss-Prot and TrEMBL	http://www.expasy.org/sprot/
to a specific Swiss-Prot/TrEMBL entry	http://www.expasy.org/cgi-bin/get-sprot-entry?accession number(AC) or entry name, example: http://www.expasy.org/cgi-bin/get-sprot-entry?P01308
to the user-friendly NiceProt View of a Swiss-Prot entry	http://www.expasy.org/cgi-bin/niceprot.pl?accession number(AC) or entry name, example: http://www.expasy.org/cgi-bin/niceprot.pl?P01308
Create your own link to a specific Swiss-Prot/TrEMBL data set, corresponding to your criteria for protein name, gene name and/or organism	http://www.expasy.org/sprot/sprot-search.html
to a Swiss-Prot query by keyword	http://www.expasy.org/cgi-bin/get-entries?KW=keyword, example: http://www.expasy.org/cgi-bin/get-entries?KW=Calcium%20channel
to a Swiss-Prot/TrEMBL query by keyword	http://www.expasy.org/cgi-bin/get-entries?KW=keyword&db=sp&db=tr, example: http://www.expasy.org/cgi-bin/get-entries?KW=Calcium%20channel&db=sp&db=tr
to a Swiss-Prot query by author name	http://www.expasy.org/cgi-bin/get-entries?RA=author name, example: http://www.expasy.org/cgi-bin/get-entries?RA=Kaufman%20J.
to a Swiss-Prot/TrEMBL query by author name	http://www.expasy.org/cgi-bin/get-entries?RA=author name&db=sp&db=tr, example: http://www.expasy.org/cgi-bin/get-entries?RA=Kaufman%20J.&db=sp&db=tr
to a Swiss-Prot/TrEMBL/TrEMBLnew query by protein_id	http://www.expasy.org/cgi-bin/get-entries?DR=protein_id, example: http://www.expasy.org/cgi-bin/get-entries?DR=CAA32536
to the results (computed on the fly) of a BLAST similarity search of a Swiss-Prot/TrEMBL entry against Swiss-Prot/TrEMBL/TrEMBL_new	http://www.expasy.org/cgi-bin/blast.pl?sequence=accession number(AC), example: http://www.expasy.org/cgi-bin/blast.pl?sequence=P04406
to a random Swiss-Prot entry	http://www.expasy.org/cgi-bin/get-random-entry.pl?S
to a random TrEMBL entry	http://www.expasy.org/cgi-bin/get-random-entry.pl?T
to a random Swiss-Prot or TrEMBL entry	http://www.expasy.org/cgi-bin/get-random-entry.pl?ST
retrieving a list of Swiss-Prot/TrEMBL entries	http://www.expasy.org/sprot/sprot-retrieve-list.html
Swiss-Prot documentation page	http://www.expasy.org/sprot/sp-docu.html
Swiss-Shop	http://www.expasy.org/swiss-shop/
FTP: Swiss-Prot	ftp://ftp.expasy.org/databases/swiss-prot/
FTP: Swiss-Prot + TrEMBL non redundant database	ftp://ftp.expasy.org/databases/sp_tr_nrdb/
PROSITE	http://www.expasy.org/prosite/
to a specific PROSITE documentation entry	http://www.expasy.org/cgi-bin/get-prodoc-entry?PDOC????? , example: http://www.expasy.org/cgi-bin/get-prodoc-entry?PDOC00314
to the user-friendly NiceSite View of a PROSITE documentation entry	http://www.expasy.org/cgi-bin/nicedoc.pl?PDOC?????, example: http://www.expasy.org/cgi-bin/nicedoc.pl?PDOC00314
to a specific PROSITE pattern or profile entry	http://www.expasy.org/cgi-bin/get-prosite-entry?PS????? , example: http://www.expasy.org/cgi-bin/get-prosite-entry?PS00365
to the user-friendly NiceSite View of a PROSITE entry	http://www.expasy.org/cgi-bin/nicesite.pl?PS?????, example: http://www.expasy.org/cgi-bin/nicesite.pl?PS00365
FTP	ftp://ftp.expasy.org/databases/prosite/
HAMAP	http://www.expasy.org/sprot/hamap/
to a specific HAMAP family rule	http://www.expasy.org/cgi-bin/hamap/nicemf.cgi?MF_????? , example: http://www.expasy.org/cgi-bin/hamap/nicemf.cgi?MF_00163
to the description of an complete microbial genome	http://www.expasy.org/sprot/hamap/organism-code.html, example: http://www.expasy.org/sprot/hamap/ECOLI.html
SWISS-2DPAGE	http://www.expasy.org/ch2d/
to a specific SWISS-2DPAGE entry	http://www.expasy.org/cgi-bin/get-ch2d-entry?accession number(AC) or entry name, example: http://www.expasy.org/cgi-bin/get-ch2d-entry?P01009
to the user-friendly Nice2DPage View of a SWISS-2DPAGE entry	http://www.expasy.org/cgi-bin/nice2dpage.pl?accession number(AC) or entry name, example: http://www.expasy.org/cgi-bin/nice2dpage.pl?P01009
to retrieve the protein list identified on a SWISS-2DPAGE reference map	http://www.expasy.org/cgi-bin/get-ch2d-table.pl?reference map name, example: http://www.expasy.org/cgi-bin/get-ch2d-table.pl?LIVER_HUMAN
FTP	ftp://ftp.expasy.org/databases/swiss-2dpage/
SWISS-3DIMAGE	http://www.expasy.org/sw3d/
to a specific SWISS-3DIMAGE entry	http://www.expasy.org/cgi-bin/sw3d-search-ac?Swiss-Prot accession number, example: http://www.expasy.org/cgi-bin/sw3d-search-ac?P01374
FTP	ftp://ftp.expasy.org/databases/swiss-3dimage/
SWISS-MODEL Repository	http://www.expasy.org/swissmod/SM_3DCrunch_Search.html
CD40Lbase	http://www.expasy.org/cd40lbase/
to a specific CD40Lbase entry	http://www.expasy.org/cgi-bin/get-cd40lb-ac.pl?CD40Lbase accession number, example: http://www.expasy.org/cgi-bin/get-cd40lb-ac.pl?4M00004
ENZYME	http://www.expasy.org/enzyme/
to a specific ENZYME entry	http://www.expasy.org/cgi-bin/get-enzyme-entry?EC number, example: http://www.expasy.org/cgi-bin/get-enzyme-entry?1.1.1.3
to the user-friendly NiceZyme View of an ENZYME entry	http://www.expasy.org/cgi-bin/nicezyme.pl?EC number, example: http://www.expasy.org/cgi-bin/nicezyme.pl?1.1.1.3
SeqAnalRef	http://www.expasy.org/seqanalref/
to a specific SeqAnalRef entry	http://www.expasy.org/cgi-bin/get-seqanalr-entry?reference identifier, example: http://www.expasy.org/cgi-bin/get-seqanalr-entry?APPR9601
SRS (Sequence Retrieval System)	http://www.expasy.org/srs5/
	For links to SRS queries / query results, consult the SRS document 'Making html links to SRS'

Tools and software packages
The ExPASy Proteomics Tools	http://www.expasy.org/tools/
Protein identification and characterization
AACompIdent	http://www.expasy.org/tools/aacomp/
AACompSim	http://www.expasy.org/tools/aacsim/
MultiIdent	http://www.expasy.org/tools/multiident/
PeptIdent	http://www.expasy.org/tools/peptident.html
TagIdent	http://www.expasy.org/tools/tagident.html
FindMod	http://www.expasy.org/tools/findmod/
GlycoMod	http://www.expasy.org/tools/glycomod/
FindPept	http://www.expasy.org/tools/findpept.html
PeptideMass	http://www.expasy.org/tools/peptide-mass.html
PeptideCutter	http://www.expasy.org/tools/peptidecutter/
Compute pI/Mw	http://www.expasy.org/tools/pi_tool.html
Pattern and profile searches
ScanProsite	http://www.expasy.org/tools/scanprosite/
Primary structure analysis
ProtParam	http://www.expasy.org/tools/protparam.html
ProtScale	http://www.expasy.org/cgi-bin/protscale.pl
Tertiary structure
Swiss-PdbViewer	http://www.expasy.org/spdbv/mainpage.html
SWISS-MODEL	http://www.expasy.org/swissmod/SWISS-MODEL.html
Post-translational modification prediction
The Sulfinator	http://www.expasy.org/tools/sulfinator/
Alignment
SIM	http://www.expasy.org/tools/sim-prot.html
LALNVIEW	http://www.expasy.org/tools/lalnview.html
Other tools
Melanie	http://www.expasy.org/melanie/
Biochemical Pathways	http://www.expasy.org/tools/pathways/
Translate	http://www.expasy.org/tools/dna.html
RandSeq	http://www.expasy.org/tools/randseq.html

Links to other molecular biology resources
Amos' WWW links	http://www.expasy.org/alinks.html
BioHunt	http://www.expasy.org/BioHunt/
ExpasyIndex	http://www.expasy.org/ExpasyHunt/
2DHunt	http://www.expasy.org/ch2d/2DHunt/
WORLD-2DPAGE	http://www.expasy.org/ch2d/2d-index.html

Documentation
What's New on ExPASy	http://www.expasy.org/history.html
ExPASy sitemap	http://www.expasy.org/sitemap.html
SWISS-FLASH electronic bulletins	http://www.expasy.org/swiss-flash/
Complete table of available documents	http://www.expasy.org/doc.html

Miscellaneous
Swiss-Quiz	http://www.expasy.org/swiss-quiz/
Swiss-Jokes	http://www.expasy.org/cgi-bin/sw-jokes.pl

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Swiss-Prot