The HAMAP families are a collection of orthologous microbial protein families, generated manually by expert curators. They are used for the high-quality automatic annotation of microbial proteomes in the framework of the Swiss-Prot protein knowledgebase. Each family
is composed of the following data:
- Annotation that is propagated to member entries (e.g. protein name, keywords).
- Computed features (e.g. export signals, transmembrane regions) that may be applied to entries by using
appropriate prediction programs.
- Alignments of a representative set of entries. There is usually a single alignment per family, unless there is a 'deep split' between bacterial and archaeal entries.
- Profiles in PROSITE format that are automatically generated from the alignments and serve for the identification
of new members in complete microbial proteomes.
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The wildcards * and ? are supported.
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| Scan your sequence against the HAMAP families |
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Enter a protein sequence (raw sequence or fasta format):
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| (Last update: 03-Apr-2003) |
| Number of families: 755 |
| (800 alignments/profiles) |
| By taxonomic scope: |
| Archaea: 106 |
| Bacteria: 332 |
| Archaea+Bacteria: 223 |
| Bacteria+Plastid: 58 |
| Bacteria+Firmicutes: 1 |
| Actinobacteria+Bacteria: 2 |
| Arch.+Bact.+Plas.: 22 |
| Bacteria+Enterobacteriaceae: 9 |
| Baci.+Bact.+Clos.: 1 |
| Arch.+Bact.+Ther.: 1 |
Coverage:
24838 Swiss-Prot entries
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