FFAS03 result: mendoza1 vs. pdb0204
Current login: mendoza1
The Burnham Institute
Godzik Lab

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gi|42525023|ref|NP_970403.1| conserved hypothetical protein [Bdellovibrio bacteriovorus] (02/16/04)
Links: ncbi  psi     Result vs. COG0204 JCSG0204 PfamA110 scop165 

FFAS03 scores below -9.5 usually mean significant similarity (less than 3% of false positives)
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Score Links Result vs. Template %idFirst MLKNTSSNLDAPVARSCDFAMKKMDLRKAFTLIEPGPVTLVTTSAGGTNNVMTISWTMAVDFTPKLAITTGPWNFSYKALTKSRECVIAIPTVDLLDKVVGVGTCSGKDTDKFDTFRLTPIKGKYVEAPLIKECVANIECKVVDIIKKHDIVVLEGVAAYFDTSRKEKRTLHAVGDGTFVVDGRTLDRKKQMRSKLLGIFLast
-68.400 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1eje_A mol:protein length:192 Fmn-Binding Protein 19  5.............AHMMSMDFEDFPVESAHRILTPRPTVMVTTDEEGNINAAPFSFTMPVSIDPPVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLRMFEVGDHNLITGSVVSASVRSESVKPVLHVGGNKFVVGDHVRHVE........... 192
-65.200 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1usc_A mol:protein length:178 Putative Styrene Monooxygenase Small Compone 14  1................MRSYRAQGPLPGFYHYY-PGVPAVVGVRVEERVNFCPAVWNTGLSADPPFGVSISPKRFTHGLLLKARRFSASFHPFGQKDLVHWLGSHSGREVDKGQAPH----FLGHTGVPILEGAYAAYELELLEVHTFGDHDLFVGRVVAVWEEEGGLALLYYGKGLYGRP------AEETFAP...... 178
-61.200 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1i0r_A mol:protein length:169 Conserved Hypothetical Protein 17  2.........................DVEAFYKI-SYGLYIVTSESNGRKCGQIANTVFQLTSKPVIAVCLNKENDTHNAVKESGAFGVSVLELETPMFIGRFGFRKSSEFEKFDGVEYK---TGKTGVPLVTQAVAVIEAKVVKECDVGTHTLFVGEAVDAEVLKDAEVLTYADYHLMKKGKT................. 158
-9.050 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1axj_ mol:protein length:122 Fmn-Binding Protein 4..........................GTFFEVLKNEGVVAIATQGEDGPHLVNTNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWAR-----AALVITVVSAEQT.................................................... 121
-7.560 ali ncbi psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1RFE Entity 1(prereleased) 12  2...............TKQRADIVMSEAEIADFVNSSRTGLATIGPDGQPHLTAMWY---AVIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTLRGV.................................................................................................. 86
-6.760 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1akj_D mol:protein length:120 T-Cell Coreceptor Cd8 1.....................SQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQ-AASPTFLLYLSQNKPKFSGKRLGDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLPAKPTTTP....................................................................... 120
-6.540 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1zxq_ mol:protein length:192 Intercellular Adhesion Molecule-2 1..........................KVFEVHVRPKKLAVEP--------KGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLVAVGKSFTIECRVPTVEPLDSLTLEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIY 192
-6.390 ali ncbi psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1RHH Entity 1(prereleased) 12  12...............................SLSAGERATLSCRASQSVSSGSLAWYQQKPGQAPRLLIYGASTDRFSGSGSGTDFTLTIGRLEPEDLAVYYCQQYGTSPYTFGQGTKLEIKRTVAAPSVLKSGTASVVCLLNN........................................................ 139
-6.360 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  7fab_L mol:protein length:208 Immunoglobulin Fab` New (Lambda Light Chain) 16  6..........................QPPSVSGAPGQRVTISCTGSSSNAGHNVKWYQQ-GTAPKLLIFHNNARFSVS--KSGTSATLAITGLQAEDEADYYCQSYDRSLRVFGGGTKLTVLRQPKAAPSVQANKATLVCLISD........................................................ 134
-6.280 ali ncbi mod psi COG0204 JCSG0204 PfamA110 pdb0204 scop165  1g77_A mol:protein-het length:218 Pyridoxine 5`-Phosphate Oxidase 11  18....TKGGLRRRDLPADPLTLFERWLSQACEAKLPTAXVVATVDEHGQPYQRIV--LLKHYDEKGXVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGA........................................................................ 141



Contact: Lukasz Jaroszewski