EVA summary for category sec (2)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	235	40	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	205	37	method/apssp2.html
JPred	167	29	method/jpred.html
PHD	168	27	method/phd.html
PHDpsi	167	27	method/phdpsi.html
PROF_king	177	35	method/prof_king.html
PROFsec	168	27	method/profsec.html
Prospect	130	28	method/prospect.html
PSIpred	210	39	method/psipred.html
PSSP	1	1	method/pssp.html
SAM-T99sec	153	38	method/samt99_sec.html
SSpro1	1	1	method/sspro1.html
SSpro2	230	40	method/sspro2.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 32 proteins and 10 methods (HTML - ASCII)
- set 2: 56 proteins and 8 methods (HTML - ASCII)
- set 3: 56 proteins and 7 methods (HTML - ASCII)
- set 4: 81 proteins and 6 methods (HTML - ASCII)
- set 5: 101 proteins and 5 methods (HTML - ASCII)
- set 6: 163 proteins and 4 methods (HTML - ASCII)
Detail level 2 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	32	dssp	1	APSSP2	76.1	+/-1.6	70.6	+/-2.8	2.3	+/-0.5	0.38	+/-0.03	0.66	+/-0.04	0.58	+/-0.05	0.53	+/-0.03	90.6	+/-5.2
				JPred	73.6	+/-1.7	70.6	+/-2.8	1.7	+/-0.4	0.33	+/-0.03	0.64	+/-0.04	0.56	+/-0.05	0.51	+/-0.03	78.1	+/-7.4
				PHDpsi	75.3	+/-1.9	70.2	+/-2.9	1.6	+/-0.4	0.36	+/-0.03	0.64	+/-0.04	0.56	+/-0.05	0.49	+/-0.03	90.6	+/-5.2
				PROF_king	73.8	+/-1.9	70.3	+/-3.2	3.3	+/-1.0	0.34	+/-0.03	0.65	+/-0.05	0.55	+/-0.05	0.50	+/-0.03	78.1	+/-7.4
				PROFsec	77.5	+/-1.6	75.3	+/-2.6	1.7	+/-0.4	0.39	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.53	+/-0.03	87.5	+/-5.9
				Prospect	73.5	+/-1.5	69.6	+/-2.8	2.3	+/-0.5	0.33	+/-0.03	0.63	+/-0.05	0.55	+/-0.05	0.49	+/-0.03	78.1	+/-7.4
				PSIpred	77.6	+/-1.8	73.3	+/-2.7	2.0	+/-0.6	0.41	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.55	+/-0.03	84.4	+/-6.5
				SAM-T99sec	76.8	+/-1.6	71.2	+/-2.8	1.6	+/-0.5	0.39	+/-0.03	0.68	+/-0.04	0.61	+/-0.04	0.52	+/-0.03	84.4	+/-6.5
				SSpro2	75.8	+/-1.5	69.6	+/-2.2	2.4	+/-0.4	0.37	+/-0.03	0.67	+/-0.04	0.58	+/-0.05	0.53	+/-0.03	71.9	+/-8.1
common 1	32	dssp	2	PHD	70.6	+/-2.4	64.8	+/-3.0	4.1	+/-1.3	0.31	+/-0.03	0.60	+/-0.05	0.51	+/-0.05	0.46	+/-0.03	84.4	+/-6.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	56	dssp	1	JPred	72.3	+/-1.5	66.9	+/-2.6	1.6	+/-0.3	0.31	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	82.1	+/-5.2
				PHDpsi	74.1	+/-1.4	67.2	+/-2.4	1.7	+/-0.4	0.32	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.49	+/-0.03	89.3	+/-4.2
				PROF_king	72.9	+/-1.4	66.9	+/-2.6	2.8	+/-0.6	0.31	+/-0.02	0.65	+/-0.04	0.55	+/-0.04	0.50	+/-0.03	82.1	+/-5.2
				PROFsec	76.5	+/-1.3	71.8	+/-2.4	1.6	+/-0.3	0.36	+/-0.03	0.68	+/-0.04	0.62	+/-0.03	0.53	+/-0.03	89.3	+/-4.2
				PSIpred	75.7	+/-1.6	69.7	+/-2.5	2.1	+/-0.4	0.38	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.55	+/-0.03	83.9	+/-5.0
				SAM-T99sec	74.7	+/-1.5	67.2	+/-2.5	1.7	+/-0.3	0.35	+/-0.03	0.68	+/-0.04	0.61	+/-0.04	0.52	+/-0.03	85.7	+/-4.7
				SSpro2	74.7	+/-1.4	67.7	+/-2.3	2.4	+/-0.3	0.35	+/-0.02	0.67	+/-0.04	0.58	+/-0.04	0.53	+/-0.03	76.8	+/-5.7
common 2	56	dssp	2	PHD	70.2	+/-1.6	62.8	+/-2.3	3.9	+/-0.8	0.28	+/-0.02	0.60	+/-0.04	0.51	+/-0.04	0.46	+/-0.02	82.1	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	56	dssp	1	JPred	72.3	+/-1.5	66.9	+/-2.6	1.6	+/-0.3	0.31	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.51	+/-0.03	82.1	+/-5.2
				PHDpsi	74.1	+/-1.4	67.2	+/-2.4	1.7	+/-0.4	0.32	+/-0.02	0.64	+/-0.04	0.56	+/-0.04	0.49	+/-0.03	89.3	+/-4.2
				PROF_king	72.9	+/-1.4	66.9	+/-2.6	2.8	+/-0.6	0.31	+/-0.02	0.65	+/-0.04	0.55	+/-0.04	0.50	+/-0.03	82.1	+/-5.2
				PROFsec	76.5	+/-1.3	71.8	+/-2.4	1.6	+/-0.3	0.36	+/-0.03	0.68	+/-0.04	0.62	+/-0.03	0.53	+/-0.03	89.3	+/-4.2
				PSIpred	75.7	+/-1.6	69.7	+/-2.5	2.1	+/-0.4	0.38	+/-0.03	0.68	+/-0.04	0.62	+/-0.04	0.55	+/-0.03	83.9	+/-5.0
				SAM-T99sec	74.7	+/-1.5	67.2	+/-2.5	1.7	+/-0.3	0.35	+/-0.03	0.68	+/-0.04	0.61	+/-0.04	0.52	+/-0.03	85.7	+/-4.7
common 3	56	dssp	2	PHD	70.2	+/-1.6	62.8	+/-2.3	3.9	+/-0.8	0.28	+/-0.02	0.60	+/-0.04	0.51	+/-0.04	0.46	+/-0.02	82.1	+/-5.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	81	dssp	1	JPred	72.6	+/-1.2	67.6	+/-1.9	2.3	+/-0.4	0.32	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.51	+/-0.02	82.7	+/-4.2
				PHDpsi	73.9	+/-1.2	67.9	+/-1.9	2.3	+/-0.5	0.33	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.49	+/-0.02	85.2	+/-4.0
				PROFsec	76.2	+/-1.2	71.9	+/-1.9	2.0	+/-0.5	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.53	+/-0.02	88.9	+/-3.5
				PSIpred	75.5	+/-1.4	71.0	+/-2.0	2.4	+/-0.4	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.02	82.7	+/-4.2
				SAM-T99sec	75.0	+/-1.2	69.0	+/-1.9	2.1	+/-0.4	0.35	+/-0.02	0.68	+/-0.04	0.61	+/-0.03	0.52	+/-0.02	87.7	+/-3.7
common 4	81	dssp	2	PHD	70.1	+/-1.5	64.6	+/-1.9	4.7	+/-0.9	0.29	+/-0.02	0.60	+/-0.04	0.51	+/-0.03	0.46	+/-0.02	81.5	+/-4.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	101	dssp	1	PROFsec	75.0	+/-1.1	71.1	+/-1.7	2.5	+/-0.5	0.35	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.53	+/-0.02	87.1	+/-3.3
				PSIpred	75.1	+/-1.3	71.1	+/-1.8	2.6	+/-0.4	0.37	+/-0.02	0.68	+/-0.03	0.62	+/-0.03	0.55	+/-0.02	83.2	+/-3.7
				SAM-T99sec	74.2	+/-1.1	68.9	+/-1.7	2.6	+/-0.4	0.34	+/-0.02	0.68	+/-0.03	0.61	+/-0.03	0.52	+/-0.02	88.1	+/-3.2
common 5	101	dssp	2	PHDpsi	72.5	+/-1.2	67.2	+/-1.7	2.7	+/-0.5	0.32	+/-0.02	0.64	+/-0.03	0.56	+/-0.03	0.49	+/-0.02	84.2	+/-3.7
common 5	101	dssp	3	PHD	69.3	+/-1.3	64.7	+/-1.7	4.8	+/-0.8	0.28	+/-0.02	0.60	+/-0.03	0.51	+/-0.03	0.46	+/-0.02	81.2	+/-3.9

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	163	dssp	1	PROFsec	74.8	+/-1.0	71.7	+/-1.3	2.7	+/-0.4	0.35	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.53	+/-0.02	85.9	+/-2.7
				PSIpred	75.1	+/-1.0	72.3	+/-1.4	2.8	+/-0.3	0.37	+/-0.01	0.68	+/-0.02	0.62	+/-0.02	0.55	+/-0.02	83.4	+/-2.9
common 6	163	dssp	2	PHDpsi	72.0	+/-1.0	67.8	+/-1.4	3.0	+/-0.4	0.32	+/-0.01	0.64	+/-0.02	0.56	+/-0.02	0.49	+/-0.02	81.6	+/-3.0
common 6	163	dssp	3	PHD	69.3	+/-1.1	65.5	+/-1.4	4.6	+/-0.6	0.28	+/-0.01	0.60	+/-0.02	0.51	+/-0.02	0.46	+/-0.01	78.5	+/-3.2