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Software and Web Servers
- PMIDigest - Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information.
- MBROLE 3.0 - Enrichment analysis of metabolomic data. (old MBROLE1 and MBROLE2 servers).
- CoMent - Interactive browsing and retrieval of relationships between biomedical concepts inferred from the scientific literature.
- iFragMent - Assigment of chemical compounds to biological pathways using a profile-based approach.
- BiodegPred - Web server for the concomitant prediction of environmental biodegradability and mamalian toxicity of chemical compounds.
- WeReview: CRISPR Tools - Live on-line repository of computational tools to assist researches at different stages of a CRISPR/Cas experiment.
- Bacterial Feature Finder (BaFF) - A system for extracting features overrepresented in sets of prokaryotic organisms.
- ODCs - Connections between rare diseases through shared genes and protein interactions
- Breaking-Cas - gRNA design for CRISPR/Cas experiments for the all eucaryotic genomes available in ENSEMBL.
- pMT - Detection of significant protein co-evolution.
- COPRED - Prediction of fold, GO molecular function and functional residues at the domain level.
- JDet - Interactive calculation and visualization of function-related conservation patterns in protein multiple sequence alignments and structures.
- Mirrortree server - Interactive study of the co-evolution of protein families.
- Scop2go database
- Gene Ontology molecular function annotations at the structural domain level.
- BDPserver -
Prediction of environmental fate for chemical compounds.
- (TAG)TSEMA server
- Prediction of pairings between members of families of interacting proteins based on similarity of evolutionary histories.
- TreeDet server
- Prediction of functional positions in multiple sequence alignments.
- EVA server
- Continuous and real-time evaluation of protein structure prediction servers.
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Mirrortree/Tol-mirrortree programs
- Prediction of interaction partners based on similarity of evolutionary histories.
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Xdet/Mtreedet programs
- Prediction of functional positions in protein multiple alignments.
You can find more information about these systems following the links above and in the
corresponding publications.
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Related links
Servers/programs page of the former Protein Design Group (CNB-CSIC) (outdated)
On line tools for sequence analysis (Expasy)
Bioinformatics Tools @ EBI
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