Software and Web Servers

  • PMIDigest - Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information.
  • MBROLE 3.0 - Enrichment analysis of metabolomic data. (old MBROLE1 and MBROLE2 servers).
  • CoMent - Interactive browsing and retrieval of relationships between biomedical concepts inferred from the scientific literature.
  • iFragMent - Assigment of chemical compounds to biological pathways using a profile-based approach.
  • BiodegPred - Web server for the concomitant prediction of environmental biodegradability and mamalian toxicity of chemical compounds.
  • WeReview: CRISPR Tools - Live on-line repository of computational tools to assist researches at different stages of a CRISPR/Cas experiment.
  • Bacterial Feature Finder (BaFF) - A system for extracting features overrepresented in sets of prokaryotic organisms.
  • ODCs - Connections between rare diseases through shared genes and protein interactions
  • Breaking-Cas - gRNA design for CRISPR/Cas experiments for the all eucaryotic genomes available in ENSEMBL.
  • pMT - Detection of significant protein co-evolution.
  • COPRED - Prediction of fold, GO molecular function and functional residues at the domain level.
  • JDet - Interactive calculation and visualization of function-related conservation patterns in protein multiple sequence alignments and structures.
  • Mirrortree server - Interactive study of the co-evolution of protein families.
  • Scop2go database - Gene Ontology molecular function annotations at the structural domain level.
  • BDPserver - Prediction of environmental fate for chemical compounds.
  • (TAG)TSEMA server - Prediction of pairings between members of families of interacting proteins based on similarity of evolutionary histories.
  • TreeDet server - Prediction of functional positions in multiple sequence alignments.
  • EVA server - Continuous and real-time evaluation of protein structure prediction servers.
  • Mirrortree/Tol-mirrortree programs - Prediction of interaction partners based on similarity of evolutionary histories.
  • Xdet/Mtreedet programs - Prediction of functional positions in protein multiple alignments.

You can find more information about these systems following the links above and in the corresponding publications.

Related links

  • Servers/programs page of the former Protein Design Group (CNB-CSIC) (outdated)

  • On line tools for sequence analysis (Expasy)
  • Bioinformatics Tools @ EBI

  • © 2012, Computational Systems Biology Group. CNB-CSIC