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This list contains links to some microbe-specific resources. These links as well as many more are also available from the Amos' WWW links page on ExPASy.

[Bacteria] [Archaea]

Bacteria

WDCM - World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
CMR - TIGR Comprehensive Microbial Ressource
GIB - Genome information broker for Microbial genomes
GeneQuiz
HOBACGEN - Homologous Bacterial Genes db
Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen
BPGD - Bacterial polysaccharide gene db
Bacterial quorum sensing
MicrobeWorld - Educational site on microbes
E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries
EcoWeb / EcoGene - Very comprehensive E.coli db
ECCE - E.coli Cell Envelope Protein Data Collection
ECDC - E.coli db collection
EcoCyc - Encyclopedia of E.coli genes and metabolism
GenProtEC - E.coli genome and proteome db
Colibri - E.coli genome db from Pasteur Institute
ECGC - E.coli Genome Center at Wisconsin University
DDBJ E.coli - E.coli home page at DDBJ
EcoReg - The E.coli regulation consortium
B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries
SubtiList - Bacillus subtilis genomic db
NRSub - Bacillus subtilis non-redundant db [Mirror in Japan]
Micado - Microbial advanced db (B.subtilis + E.coli)
BSORF - Japanese server on B.subtilis
DBTBS - Db of B.subtilis promoters and transcription factors
A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site
B.halodurans - Bacillus halodurans strain C-125 db
B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project
BGDB - Bordetella genome db
B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute
B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute
B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute
BbDB - TIGR Borrelia burgdorferi genome db
B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries
iBGD - Integrated Buchnera genome db
B.cepacia - Burkholderia cepacia genome project
C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project
Chlamydia - Chlamydia pneumoniae and trachomatis
C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR
C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR
C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db http://www.brgene.lncc.br/indexCV.html
C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute
C.acetobutylicum - GTC Clostridium acetobutylicum strain ATCC 824 data
C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute
C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute
C.ruminantium - Cowdria ruminantium genome project at Sanger Institute
C.hutchinsonii - Cytophaga hutchinsonii genome project
DrDB - TIGR Deinococcus radiodurans strain R1 genome db
D.hafniense - Desulfitobacterium hafniense genome project
E.faecium - Enterococcus faecium genome project
F.acidarmanus - Ferroplasma acidarmanus genome project
F.tularensis - Francisella tularensis genome WWW site
H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries
HiDB - Haemophilus influenzae genome db at TIGR
H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries
HpDB - Helicobacter pylori strain 26695 genome db at TIGR
H.pylori J99 - Helicobacter pylori strain J99 genome db at Astra
PyloriGene - Helicobacter pylori genomic db
L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db
L.plantarum - Lactobacillus plantarum genome project
ListiList - Listeria monocytogenes and Listeria innocua genome db
MC-1 - Magnetococcus MC-1 genome project
M.magnetotacticum - Magnetospirillum magnetotacticum genome project
MycDB - Mycobacterium db
M.bovis - Mycobacterium bovis strain AF2122/97 genome project
Leproma - Mycobacterium leprae strain TN genome db
M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute
TubercuList - Mycobacterium tuberculosis strain H37Rv genome db
MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR
M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute
M.tuberculosis secreted proteins
M.tuberculosis structural genomics consortium
M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries
MgDB - Mycoplasma genitalium genome db at TIGR
M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries
M.pneumoniae - Mycoplasma pneumoniae genome project
MypuList - Mycoplasma pulmonis genome db
Mycoplasma synoviae genome db
N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute
N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea - Nitrosomonas europaea genome project
N.punctiforme - Nostoc punctiforme genome project
P.marinus - Prochlorococcus marinus genome project
P.aeruginosa project - Pseudomonas aeruginosa genome project
P.aeruginosa db - Pseudomonas aeruginosa genome db
P.fluorescens - Pseudomonas fluorescens genome project
R.solanacearum - Ralstonia solanacearum genome project
Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries
Rhizobium pNGR234a analysis
RsGDB - Rhodobacter sphaeroides genome db
R.sphaeroides - Rhodobacter sphaeroides genome project
R.palustris - Rhodopseudomonas palustris genome project
RicBase - Rickettsia conorii strain Malish 7 genome project
R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries
R.prowazekii - Rickettsia prowazekii strain Madrid E genome project
S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute
S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries
S.typhimurium - S.typhimurium genome project
RhizoBase - Sinorhizobium loti genome project
S.meliloti - Sinorhizobium meliloti genome project
S.aromaticivorans - Sphingomonas aromaticivorans genome project
S.aureus - Staphylococcus aureus strain NCTC 8325 genome project
S.mutans - Streptococcus mutans strain UAB159 genome project
S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project
S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute
S.suis - Streptococcus suis genome project at Sanger Institute
S.uberis - Streptococcus uberis genome project at Sanger Institute
S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute
S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project
PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries
CyanoBase - Synechocystis PCC 6803 db
Synechococcus - Marine synechococcus genome project
T.fusca - Thermomonospora fusca genome project
TmDB - Thermotoga maritima genome db at TIGR
TpDB - Treponema pallidum genome db at TIGR
T.erythraeum - Trichodesmium erythraeum genome project
T.whipplei - Tropheryma whipplei genome project at Sanger Institute
U.urealyticum - Ureaplasma urealyticum genome WWW site
VcDB - Vibrio cholerae genome db at TIGR
Xanthomonas - Xanthomonas genome projects
X.fastidiosa - Xylella fastidiosa genome WWW site
X.fastidiosa at DOE - DOE Xylella fastidiosa genome project
Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute
Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute
Y.pestis at CNBP - Yersinia pestis genome WWW site

Archaea

A.pernix - Aeropyrum pernix K1 genome db
AfDB - Archaeoglobus fulgidus genome db at TIGR
Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project
M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db
M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries
MjDB - Methanococcus jannaschii genome db at TIGR
MjFdb - Methanococcus jannaschii functions db
M.barkeri - Methanosarcina barkeri genome project
Pyrococcus abyssi genome and re-annotation db
P.abyssi - Pyrococcus abyssi genome project and db
P.furiosus - Pyrococcus furiosus genome project
P.horikoshii - Pyrococcus horikoshii OT3 db
SGP - Sulfolobus solfataricus strain P2 genome project
T.acidophilum - Thermoplasma acidophilum genome project
T.volcanium - Thermoplasma volcanium genome project

Last modified 17-Apr-2003

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