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HAMAP plastid proteomes

HIGH-QUALITY AUTOMATED AND MANUAL ANNOTATION OF MICROBIAL PROTEOMES
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Proteomes by type: [Summary] Bacteria Archaea Plastids

List of completed plastid genomes

Swiss-Prot Release 41.3 of 04-Apr-2003: 123945 entries
TrEMBL Release 23.5 of 04-Apr-2003: 828871 entries
25 genomes

code
name
EMBL entry
proteins
ANTFOAnthoceros formosae (Hornwort)AB08617991
ARATHArabidopsis thaliana (Mouse-ear cress)AP00042379
ASTLOAstasia longa (Euglenophycean alga)AJ29472545
ATRBEAtropa belladonna (Belladonna)AJ31658284
CHAGLChaetosphaeridium globosumAF49427895
CHLVUChlorella vulgarisAB00168488
CYACACyanidium caldariumAF022186197
CYAPACyanophora paradoxaU30821145
EPIVIEpifagus virginiana (Beechdrops)M8188421
EUGGREuglena gracilisX7081069
GUITHGuillardia theta (Cryptomonas phi)AF041468147
LOTJALotus japonicusAP00298377
MAIZEZea mays (Maize)X8656392
MARPOMarchantia polymorpha (Liverwort)X0446592
MESVIMesostigma virideAF166114105
NEPOLNephroselmis olivaceaAF137379124
ODOSIOdontella sinensisZ67753137
OENHOOenothera hookeri (Hooker's evening primrose)AJ271079103
ORYSAOryza sativa (Rice)X1590193
PINTHPinus thunbergii (Green pine) (Japanese black pine)D17510156
PORPUPorphyra purpureaU38804209
PSINUPsilotum nudum (Whisk fern)AP00463889
SPIOLSpinacia oleracea (Spinach)AJ40084891
TOBACNicotiana tabacum (Common tobacco)Z0004491
WHEATTriticum aestivum (Wheat)AB04224078


This is a table of the genes found in plastid (chloroplast or cyanelle) genomes. The columns represent a plastid as an organism code. The lines list the gene names. The entries in the table indicate the number of such genes found in each plastid genome. Descriptions of the genes are available in the list of chloroplast and cyanelle encoded proteins.

         A   A   A   A   C   C   C   C   E   E   G   L   M   M   M   N   O   O   O   P   P   P   S   T   W
         N   R   S   T   H   H   Y   Y   P   U   U   O   A   A   E   E   D   E   R   I   O   S   P   O   H
         T   A   T   R   A   L   A   A   I   G   I   T   I   R   S   P   O   N   Y   N   R   I   I   B   E
         F   T   L   B   G   V   C   P   V   G   T   J   Z   P   V   O   S   H   S   T   P   N   O   A   A
         O   H   O   E   L   U   A   A   I   R   H   A   E   O   I   L   I   O   A   H   U   U   L   C   T

total   86  87  28  84  97  77 197 137  24  61 142  81  85  88  99  93 127  93  86  76 192  84  83  85  84
accA                             1                                                       1                  accA  
accB                             1                                                       1                  accB  
accD     1   1       1   1   1   1       1           1       1       1       1   1   1   1   1   1   1      accD  
acpP                             1   1           1                       1               1                  acpP  
apcA                             1   1                                                   1                  apcA  
apcB                             1   1                                                   1                  apcB  
apcD                             1   1                                                   1                  apcD  
apcE                             1   1                                                   1                  apcE  
apcF                             1   1                                                   1                  apcF  
argB                             1                                                       1                  argB  
atpA     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  atpA  
atpB     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  atpB  
atpD                             1   1           1                       1               1                  atpD  
atpE     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  atpE  
atpF     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  atpF  
atpG                             1   1           1                       1               1                  atpG  
atpH     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  atpH  
atpI     1   1       1   1   1   1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  atpI  
carA                             1                                                       1                  carA  
ccsA     1   1       1   1   1   1   1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  ccsA  
cemA         1       1   1   1   1               1   1   1   1   1   1       1   1   1   1   1   1   1   1  cemA  
cfxQ                             1               1                       1               1                  cfxQ  
chlB     1               1   1       1                       1   1   1               1   1                  chlB  
chlI                     1   1   1   1       1   1               1   1   1               1                  chlI  
chlL     1                   1       1                       1   1   1               1   1                  chlL  
chlN     1                   1   1   1                       1   1                   1   1                  chlN  
clpC                             1               1                       1               1                  clpC  
clpP     1   1       1   1   1       2   1           1   1   1   1   1       1   1   1       1   1   1   1  clpP  
cobA                             1                                                                          cobA  
cpcA                             1   1                                                   1                  cpcA  
cpcB                             1   1                                                   1                  cpcB  
cpcG                             1                                                       1                  cpcG  
cpeA                                                                                     1                  cpeA  
cpeB                                             1                                       1                  cpeB  
crtE                                 1                                                                      crtE  
cysA     1                   1                               1   1   1                                      cysA  
cysT                         1                               1   1   1                                      cysT  
dnaB                             1               1                       1               1                  dnaB  
dnaK                             1   2           1                       1               1                  dnaK  
fabH                                                                                     1                  fabH  
ftrB                             1               1                                       1                  ftrB  
ftsH                     1   1   1               1                       1               1                  ftsH  
ftsI                                                             1   1                                      ftsI  
ftsW                                 1                           1   1                                      ftsW  
glmS                             1                                                                          glmS  
glnB                             1                                                       1                  glnB  
gltB                             1                                                       1                  gltB  
groL                             1   2           1                       1               1                  groL  
groS                                 2                                                                      groS  
hemA                                 1                                                                      hemA  
hisH                             1   1                                                                      hisH  
hisS                                                                                     1                  hisS  
hup                                              1                                                          hup   
ilvB                             1               1                                       1                  ilvB  
ilvH                             1               1                                       1                  ilvH  
infA     1               1   1           1               1   1   1   1           1   1       1   1   1   1  infA  
infB                                             1                                       1                  infB  
infC                             1                                                       1                  infC  
lipB                             1                                                                          lipB  
lpxA                             1                                                                          lpxA  
lpxC                             1                                                                          lpxC  
matK         1       1   1               1           1   1   1               1   1   1       1   1   1   1  matK  
menB                             1                                                                          menB  
minD                         1                   1               1   1                                      minD  
minE                         1                   1                                                          minE  
nadA                                 1                                                                      nadA  
ndhA     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhA  
ndhB     2   2       1   1                           2   2   1   1   1       2   2           2   2   2   2  ndhB  
ndhC     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhC  
ndhD     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhD  
ndhE     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhE  
ndhF     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhF  
ndhG     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhG  
ndhH     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   2  ndhH  
ndhI     1   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhI  
ndhJ     1   1       1   1                           1   1   1   1           1   1           1   1   1   1  ndhJ  
ndhK     2   1       1   1                           1   1   1   1   1       1   1           1   1   1   1  ndhK  
pbsA                                             1                                       1                  pbsA  
pdhA                                                                                     1                  pdhA  
pdhB                                                             1                       1                  pdhB  
petA     1   1       1   1   1   1   1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  petA  
petB     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   2   1   1   1   1   1   1   1  petB  
petD     1   1       1   1   1   1   1           1   1   1   1   1   1   1       1   1   1   1   1   1   1  petD  
petF                             1   1           1                       1               1                  petF  
petG     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  petG  
petJ                             1                                                       1                  petJ  
petL     1   1       1   1   1       1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  petL  
petM                             1   1           1                       1               1                  petM  
petN     1   1       1   1       1   1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  petN  
pgmA                                                                                     1                  pgmA  
pheT                                                                                     1                  pheT  
preA                             1   1                                                   1                  preA  
psaA     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psaA  
psaB     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psaB  
psaC     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psaC  
psaD                             1               1                       1               1                  psaD  
psaE                             1   1           1                       1               1                  psaE  
psaF                             1   1           1                       1               1                  psaF  
psaI     1   1       1   1   1   1   1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psaI  
psaJ     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psaJ  
psaK                             1               1                                       1                  psaK  
psaL                             1               1                       1               1                  psaL  
psaM     1               1   1   1   1       1   1           1   1       1           1   1   1              psaM  
psbA     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   2   1   1   1   1   1  psbA  
psbB     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbB  
psbC     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbC  
psbD     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbD  
psbE     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbE  
psbF     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbF  
psbH     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbH  
psbI     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbI  
psbJ     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbJ  
psbK     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbK  
psbL     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbL  
psbM     1   1       1   1   1       1               1   1   1   1   1       1   1   1       1   1   1   1  psbM  
psbN     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbN  
psbT     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  psbT  
psbU                                                                                                        psbU  
psbV                             1   1           1                       1               1                  psbV  
psbW                             1   1           1                       1               1                  psbW  
psbX                                 1           1                       1               1                  psbX  
psbY                             1   1           1                       2               1                  psbY  
rbcL     1   1   1   1   1   1   1   1       1   1   1   1   1   1   2   1   1   1   1   1   1   1   1   1  rbcL  
rbcS                             1   1           1                       1               1                  rbcS  
rne                                              1                   1                   1                  rne   
rpl1                             1   1           1                       1               1                  rpl1  
rpl2     1   2   1   2   1   1   1   1   1   1   1   1   1   1   1   1   1   2   2   1   1   1   1   2   2  rpl2  
rpl3                             1   1           1                       1               1                  rpl3  
rpl4                             1               1                       1               1                  rpl4  
rpl5             1       1   1   1   1       1   1               1   1   1               1                  rpl5  
rpl6                             1   1           1                       1               1                  rpl6  
rpl9                                                                                     1                  rpl9  
rpl11                            1   1           1                       1               1                  rpl11 
rpl12            1           1   1   1       1   1                   1   1               1                  rpl12 
rpl13                            1               1                       1               1                  rpl13 
rpl14    1   1   1   1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpl14 
rpl16    1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpl16 
rpl18                            1   1           1                       1               1                  rpl18 
rpl19                        1   1   1           1               1   1   1               1                  rpl19 
rpl20    1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpl20 
rpl21    1               1       1   1           1           1           1               1   1              rpl21 
rpl22    1   1   1   1   1       1   1       1   1       1   1   1       1   1   1   1   1   1   1   1   1  rpl22 
rpl23    1   2   1   2   1   1   1           1   1   1   2   1   1   1   1   1   2   1   1   1   1   2   2  rpl23 
rpl24                            1               1                       1               1                  rpl24 
rpl27                            1               1                       1               1                  rpl27 
rpl28                            1   1                                                   1                  rpl28 
rpl29                            1               1                       1               1                  rpl29 
rpl31                            1               1                       1               1                  rpl31 
rpl32    1   1   1   1   1   1   1           1   1   1   1   1   1   1   2   1   1   1   1   1   1   1   1  rpl32 
rpl33    1   1       1   1       1   1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1  rpl33 
rpl34                            1   1           1                       1               1                  rpl34 
rpl35                            1   1           1                       1               1                  rpl35 
rpl36    1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpl36 
rpoA     1   1   1   1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpoA  
rpoB     1   1   1   1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpoB  
rpoC1    1   1   1   1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpoC1 
rpoC2    1   1   1   1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rpoC2 
rpoZ                             1               1               1                       1                  rpoZ  
rps1                                                                                     1                  rps1  
rps2     1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps2  
rps3     1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps3  
rps4     1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps4  
rps5                             1   1           1                       1               1                  rps5  
rps6                             1   1           1                       1               1                  rps6  
rps7     2   2   1   2   1   1   1   1   2   1   1   2   2   1   1   1   1   2   2   1   1   2   2   2   2  rps7  
rps8     1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps8  
rps9             1           1   1   1       1   1               1   1   1               1                  rps9  
rps10                            1   1           1                       1               1                  rps10 
rps11    1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps11 
rps12    1   2   1   1   1   1   1   1   2   1   1   2   2   1   1   1   1   8   2   1   1   2   2   2   2  rps12 
rps13                            1   1           1                       1               1                  rps13 
rps14    1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps14 
rps15        1       1   1                           1   2   1   1           1   2   1       1   1   1   2  rps15 
rps16    1   1       1   1       1   1           1   1   1       1       1   1   1       1       1   1   1  rps16 
rps17                            1   1           1                       1               1                  rps17 
rps18    1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  rps18 
rps19    1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   2  rps19 
rps20                                1           1                       1               1                  rps20 
secA                             1               1                       1               1                  secA  
secY                             1   1           1                       1               1                  secY  
thiG                             1                                       1               1                  thiG  
trmE                             1                                                                          trmE  
trpA                             1                                                       1                  trpA  
trpG                             1   1                                                   1                  trpG  
trxA                             1                                                       1                  trxA  
tsf                              1               1                                       1                  tsf   
tufA             1       1   1   1   1       1   1               1   1   1               1                  tufA  
ycf65                            1               1               1                       1                  ycf65 
ycf1         2       1   1               1           1       2   1   1       1       1       1   2   1      ycf1  
ycf2     1   2       2                   2           2       1   1   1       2       1       1   1   1      ycf2  
ycf3     1   1       1   1   1   1   1           1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  ycf3  
ycf4     1   1       1   1   1   1   1       1   1   1   1   1   1   1   1   1   1   1   1   1   1   1   1  ycf4  
ycf9         1       1       1   1   1       1   1   1   1   1   1   1   1   1   1   1   1       1   1   1  ycf9  
ycf12    1               1   1   1   1       1   1           1   1   1   1           1   1   1              ycf12 
ycf13            1                           1                                                              ycf13 
ycf15        2       2                                   1                                           1      ycf15 
ycf16                            1   1           1                       1               1                  ycf16 
ycf17                            1   1           1                                       1                  ycf17 
ycf18                            1                                                       1                  ycf18 
ycf19                            1               1                                       1                  ycf19 
ycf20                            1               1               1                       1                  ycf20 
ycf21                                1                                                   1                  ycf21 
ycf22                                                                                    1                  ycf22 
ycf23                            1   1                                                   1                  ycf23 
ycf24                            1   1           1                       1               1                  ycf24 
ycf26                            1                                                       1                  ycf26 
ycf27                            1   1           1                                       1                  ycf27 
ycf28                                                                                    1                  ycf28 
ycf29                                1           1                                       1                  ycf29 
ycf30                            1   1           1                       1               1                  ycf30 
ycf32                                                                                                       ycf32 
ycf33                                1           1                       1               1                  ycf33 
ycf34                                1                                                   1                  ycf34 
ycf35                                1           1                       1               1                  ycf35 
ycf36                                1           1                                       1                  ycf36 
ycf37                            1   1           1                                       1                  ycf37 
ycf38                                1                                                   1                  ycf38 
ycf39                            1   1           1                       1               1                  ycf39 
ycf40                            1                                       1               1                  ycf40 
ycf41                                                                    1                                  ycf41 
ycf42                                                                    1               1                  ycf42 
ycf43                            1               1                       1               1                  ycf43 
ycf44                            1               1                       1               1                  ycf44 
ycf45                            1                                       1               1                  ycf45 
ycf46                                            1                       1               1                  ycf46 
ycf47                                            1                       1               1                  ycf47 
ycf48                                1                                                                      ycf48 
ycf49                            1   1                                                                      ycf49 
ycf50                                1                                                                      ycf50 
ycf51                                1                                                                      ycf51 
ycf52                                                                                    1                  ycf52 
ycf53                            1                                                       1                  ycf53 
ycf54                            1                                                       1                  ycf54 
ycf55                            1                                                       1                  ycf55 
ycf56                                                                                    1                  ycf56 
ycf62                    1   1   1                               1   1                   1                  ycf62 
ycf66                    1                                   1   1       1                                  ycf66 
ycf68                                                    1                       1   1                      ycf68 
ycf70                                                    1                       1                          ycf70 
ycf72                                                    1                       1                          ycf72 
ycf80                            1               1                                       1                  ycf80 
ycf81                                                            1   1                                      ycf81 
ycf82            1               1           1                                                              ycf82 
ycf83                            1                                                       1                  ycf83 
other    2              10      27           2                       2       4       2       1              other 

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