NAR Database Issue

AARSDB

Aminoacyl-tRNA synthetase sequences
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ABCdb

ABC transporters
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AraC/XylS database Tobes, R., MartÌnez-Bueno, M., Ramos, J.L.

A database of the AraC/XylS protein family of positive regulators in bacteria.
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ASPD

ASPD is a new curated database that incorporates data on full-length protei
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BRENDA

BRENDA is a comprehensive relational database on functional and molecular i
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DAtA

Annotated coding sequences from Arabidopsis
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DExH/D Family Database

DEAD-box, DEAH-box, and DExH-box proteins
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Endogenous GPCR List

G protein-coupled receptors; expression in cell lines
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ESTHER Cousin, X.¹, Hotelier, T.², Marton, P.¹, Chatonnet, A.¹

Esterases and alpha/beta hydrolase enzymes and relatives
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EXProt Ursing, B.M., van Enckevort, F.H.J., Leunissen, J.A.M., Siezen, R.J.

Proteins with experimentally-verified function
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FUNPEP

Low-complexity or compositionally-biased protein sequences
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GenProtEC Riley, M., Serres, M.H., Liang, P., Sun, Y.

Escherichia coli K-12 genome, gene products, and homologs
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GPCRDB

G protein-coupled receptors
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Histone Database Sullivan, S.¹, Sink, D.W.², Trout, K.L.², Makalowska, I.², Taylor, P.M.¹, Baxevanis, A.D.², Landsman, D.¹

Histone and histone fold sequences and structures
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HIV Molecular Immunology Database

HIV epitopes
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Homeobox Page

Information relevant to homeobox proteins, classification, and evolution
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Homeodomain Resource

Homeodomain sequences, structures, and related genetic and genomic information
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HUGE

Large (>50 kDa) human proteins and cDNA sequences
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IMGT Lefranc, M.-P.

Immunoglobulin, T cell receptor, and MHC sequences from human and other vertebrates
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IMGT/HLA Robinson, J, Waller, MJ, Marsh, SGE

Human MHC sequences
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InBase Perler, F.B.

All known inteins (protein splicing elements): properties, sequences, bibliography
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Kabat Database

Sequences of proteins of immunological interest
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LGICdb

Ligand-gated ion channel subunit sequences
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MEROPS Rawlings,N.D., O'Brien,E.A., Barrett,A.J.

Proteolytic enzymes (proteases/peptidases)
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MetaFam

Integrated protein family information
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Metalloprotein Database and Browser Castagnetto, J.M., Hennessy, S.W., Roberts, V.A., Getzoff, E.D., Tainer, J.A., Pique, M.E.

Metal-binding sites in metalloproteins
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MHCBN Bhasin, M., Singh, H., Raghava, G. P. S.

MHC-binding and non-binding peptides
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MHCPEP

MHC-binding peptides
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Nuclear Receptor Resource Danielsen, M., Martinez, E.

Nuclear receptor superfamily
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NUREBASE Duarte, J.¹, Perriere, G.², Laudet, V.¹, Robinson-Rechavi, M.¹

Nuclear hormone receptors
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Olfactory Receptor Database

Sequences for lfactory receptor-like molecules
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ooTFD

Transcription factors and gene expression
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Peptaibol

Peptaibol (antibiotic peptide) sequences
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PhosphoBase

Protein phosphorylation sites
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PKR

Protein kinase sequences, enzymology, genetics, and molecular and structural properties.
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PLANT-PIs De Leo F.¹, Volpicella M.¹, Licciulli F.², Liuni S.³, Gallerani R.¹, Ceci L.R.³

Plant protease inhibitors
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PlantsP Gribskov, M.¹, Chan, C.W.⁸, Fana, F.¹, Harmon, A.C.⁴, Harper, J.³, Hrabak, E.⁶, Schaller, G.E.⁷, Smith, D.W.², Tax, F.E.⁵, Zhang, G.²

Plant protein kinases and protein phosphatases
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PPMdb

Arabidopsis plasma membrane protein sequence and expression data
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Prolysis

Proteases and natural and synthetic protease inhibitors
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PROMISE

Prosthetic centers and metal ions in protein active sites
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Protein Information Resource (PIR)

Comprehensive, annotated, non-redundant protein sequence database
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Ribonuclease P Database

RNase P sequences, alignments, and structures
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S/MARt DB

S/MARt DB, the S/MAR transaction database, is a relational database coverin
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SENTRA

Sensory signal transduction proteins
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SWISS-PROT/TrEMBL

Curated protein sequences
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TIGRFAMs

Protein family resource for the functional identification of proteins
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TRANSFAC

Transcription factors and binding sites
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trEST, trGEN, Hits Pagni, M.¹, Falquet, L.¹, Iseli, C.², Jongeneel, V.², Junier, T.³, Bucher, P.³

trEST and trGEN are two databases of hypothetical protein sequences. Hits is a pre-compiled list of domains/signatures predicted on them.
database summary

VIDA Albà, M.M.¹, Holzerlandt, R.¹, Myers, R.E.¹, Shepherd, A.J.², Lee, D.², Martin, N.³, Orengo, C.A.², Kellam, P.¹

Homologous viral protein families
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Wnt Database

Wnt proteins and phenotypes
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Database Category: Protein Databases