Alphabetical Database List
16S and 23S Ribosomal
RNA Mutation Database Triman, K.L, Vavoulis, S.T.
5S Ribosomal RNA Database
ACeDB
C. elegans, S. pombe, and
human sequences and genomic information
database
summary
ALFRED
Osier, M.V.
1, Cheung, K.-H.
2, Druskin, L.
2,
Pakstis, A.J.
1, Miller, P.L.
2, Kidd, J.R.
1,
Kidd, K.K.
1
AllGenes
Babenko, V., Brunk, B., Crabtree, J., Diskin, S., Li, L., Mazzarelli, J,
McWeeney, S., Pinney, D., Pizarro, A., Schug, J., Stoeckert, C
Human and mouse gene index
integrating gene, transcript and protein annotation
database
summary
AMmtDB
Lanave C.
1, Licciulli F.
2, Incampo L.
2,
Marolla A.
2, Attimonelli M.
2
Androgen Receptor
Gene Mutations Database
AngioDB
Angiogenesis is the formation
of new capillaries sprouting from pre-existin
database
summary
AraC/XylS database
Tobes, R., MartÌnez-Bueno, M., Ramos, J.L.
A database of the AraC/XylS
protein family of positive regulators in bacteria.
database
summary
ASDB
Protein products and expression
patterns of alternatively-spliced genes
database
summary
ASPD
ASPD is a new curated database
that incorporates data on full-length protei
database
summary
Asthma Gene Database
Wjst M
Linkage and mutation studies
on the genetics of asthma and allergy
database
summary
ASTRAL
Chandonia, J. M.
1, Walker, N.
2, Lo Conte, L.
3,
Koehl, P.
4, Levitt, M.
4, Brenner, S. E.
5
Sequences of domains of known
structure, selected subsets, and sequence-structure correspondences
database
summary
Atlas of Genetics
and Cytogenetics in Oncology and Haematology Huret
J.L
1, Dessen P.
2, Bernheim A.
3
BAliBASE
Benchmark database for comparison
of multiple sequence alignments
database
summary
BioMagResBank
NMR spectroscopic data from
proteins, peptides, and nucleic acids
database
summary
Biomolecular Interaction
Network Database (BIND) Bader, G.D.
2,
Donaldson, I.
5, Wolting, C.
5, Ouellette, B.F.F.
3,
Pawson, T.
2, Hogue, C.W.V.
2
Blocks
Henikoff, J.G.
1, Pietrokovski, S.
3, Greene, E.A.
1,
Ng, P.C.
1, Henikoff, S.
2
Multiple alignments of conserved
regions of protein families
database
summary
BRENDA
BRENDA is a comprehensive
relational database on functional and molecular i
database
summary
CDD
Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer,
L.Y., Bryant, S.H.
CE
CE: A Resource to Compute
and Review 3-D Protein Structure Alignments
database
summary
Clusters of Orthologous
Groups (COG) Tatusov, R.L., Natale, D.A., Fedorova,
N.D., Jackson, J., Jacobs, A., Krylov, D.M., Mekhedov, S.L., Nikolskaya,
A.N., Rao, B.S., Wolf, Y.I., Aravind, L., Lanczycki, C., Masumder, R.,
Sreekumar, K., Vasudevan, S., Walker, D.R., Tatusova, T.A., Yao, K., Yin,
J., Koonin, E.V.
Phylogenetic classification
of proteins from 44 complete genomes
database
summary
CluSTr
Kriventseva, E.V., Servant, F., Fleischmann, W., Zdobnov, E.V., Apweiler,
R.
Collection of mRNA-like
Noncoding RNAs
Comprehensive Microbial
Resource
CSD
Crystal structure information
for organic and metal organic compounds.
database
summary
Cytokine Gene Polymorphism
Database
Cytokine gene polymorphisms,
in vitro expression and disease-association studies
database
summary
Database of Germline
p53 Mutations
Database of Interacting
Proteins Xenarios, I., Salwinski, L., Xiaoqun, JD.,
Higney, P., Kim, SM., Eisenberg, D.
Database of Macromolecular
Movements
Descriptions of protein and
macromolecular motions, including movies
database
summary
Database of Ribosomal
Crosslinks (DRC)
DBTBS
Ishii, T.
1, Yoshida, K.
2, Terai, G.
3,
Fujita, Y.
2, Nakai, K.
4
DBTSS
DataBase of human Transcriptional
Start Sites and full-length cDNAs
database
summary
Decoys 'R' Us
Computer-generated protein
conformations based on sequence data
database
summary
Dictyostelium Genome
Sequencing Project
DNA Data Bank of Japan
(DDBJ) Imanishi, T.
1, Miyazaki, S.
2,
Fukami-Kobayashi, K.
2, Sugawara, H.
2, Gojobori, T.
2,
Tateno, Y.
2
All known nucleotide and
protein sequences; International Nucleotide Sequence Database Collaboration
database
summary
DrugDB
Pharmacologically-active
compounds; generic and trade names
database
summary
DSDBASE
Vinayagam, A., Sowdhamini, R.
DT40
Thousands of new vertebrate
genes have been discovered and genetic systems
database
summary
EcoCyc
Karp, P.D.
1, Collado-Vides, J.
2, Paulsen, I.
3,
Riley, M.
1, Saier, M.
4, Paley, S.
1, Bonavides,
C.
2, Gama-Castro, S.
2
E. coli K-12 genome, metabolic
pathways, transporters, and gene regulation
database
summary
EMBL Nucleotide Sequence
Database
All known nucleotide and
protein sequences; International Nucleotide Sequence Database Collaboration
database
summary
EPConDB
Pizarro, A.
1, Pinney, D.
1, Crabtree, J.
1,
Mazzarelli, J.
1, Grant, G.
1, Le, P.
1,
Manduchi, E.
1, McWeeney, S.
1, Scearce, M.
2,
Brestelli, J.
2, Brownstein, B.
3, Clifton, S.
4,
Inoue, H.
5, Pape, D.
4, Melton, D.
6, Permutt,
A.
5, Kaestner, K.
2, Stoeckert, C.
2
EPD
Cavin PÈrier, R.
1, Praz, V.
2, Bucher, P.
2
Eukaryotic POL II promoters
with experimentally-determined transcription start sites
database
summary
ESTHER
Cousin, X.
1, Hotelier, T.
2, Marton, P.
1,
Chatonnet, A.
1
European Large Subunit
Ribosomal RNA Database Wuyts, J.
1, Van
de Peer, Y.
2, Winkelmans, T.
1, De Wachter, R.
1
Alignment of large subunit
ribosomal RNA sequences with secondary structure information
database
summary
European Small Subunit
Ribosomal RNA Database Wuyts, J.
1, Van
de Peer, Y.
2, Winkelmans, T.
1, De Wachter, R.
1
Alignment of small subunit
ribosomal RNA sequences with secondary structure information
database
summary
EXProt
Ursing, B.M., van Enckevort, F.H.J., Leunissen, J.A.M., Siezen, R.J.
FLAGdb/FST
Samson, F.
1, Brunaud, V.
1, Balzergue, S.
1,
Dubreucq, B.
2, Lepiniec, L.
2, Pelletier, G.
3,
Caboche, M.
1, Lecharny, A.
1
FUGOID
FUGOID is a web-based, taxonomically
broad organelle intron database that c
database
summary
Full-Malaria
Full-length cDNA library
from erythrocytic-stage Plasmodium falciparum
database
summary
FUNPEP
Low-complexity or compositionally-biased
protein sequences
database
summary
GELBANK
Babnigg, G., Giometti, C.S.
GenBank
All known nucleotide and
protein sequences; International Nucleotide Sequence Database Collaboration
database
summary
Gene Expression Database
(GXD) Ringwald,M., Eppig,J.T., Begley,D.A., Hayamizu,T.F.,
Hill,D.P., McCright,I.J., Smith,C.M., Kadin,J.A., Richardson,J.E.
Gene Expression Omnibus
(GEO)
Gene Resource Locator
Honkura, T.
1, Ogasawara, J.
2, Yamada, T.
1,
Morishita, S.
1
GeneNet
The GeneNet database is designed
for accumulation of information on gene ne
database
summary
Genew: The Human Gene
Nomenclature Database Wain,H.M., Lush,M., Ducluzeau,F.,
Povey,S.
Genome Information
Broker
GenProtEC
Riley, M., Serres, M.H., Liang, P., Sun, Y.
GlycoSuiteDB
Cooper, C., Harrison, M., Webster, J., Wilkins, M., Packer, N.
N- and O-linked glycan structures
and biological source information
database
summary
GOLD
Information regarding complete
and ongoing genome projects
database
summary
GTOP
Large-scale genome projects
generate an unprecedented number of protein seq
database
summary
Haemophila B Mutation
Database
Point mutations, short additions,
and deletions in the Factor IX gene
database
summary
HERVd
The human endogenous retroviruses
database (HERVd) is maintained at the Ins
database
summary
HGVbase
Fredman, D.
1, Siegfried, M.
1, Yuan, Y.P.
2,
Bork, P.
2, Lehvaslaiho, H.
3, Brookes, A.J.
1
Histone Database
Sullivan, S.
1, Sink, D.W.
2, Trout, K.L.
2,
Makalowska, I.
2, Taylor, P.M.
1, Baxevanis, A.D.
2,
Landsman, D.
1
HIV Molecular Immunology
Database
Homeobox Page
Information relevant to homeobox
proteins, classification, and evolution
database
summary
Homeodomain Resource
Homeodomain sequences, structures,
and related genetic and genomic information
database
summary
Homophila
Gribskov, M.
1, Bier, E.
2, Reiter, L.T.
3,
Chien, S.
4
Relationship of human disease
genes to genes in Drosophila
database
summary
HOWDY
HOWDY is an integrated database
system for accessing and analyzing human ge
database
summary
HS3D
Pollastro, P., Rampone, S.
HSSP
Structural families and alignments;
structurarlly-conserved regions and domain architecture
database
summary
Human Gene Mutation
Database (HGMD)
Known (published) gene lesions
underlying human inherited disease
database
summary
Human p53, human hprt,
rodent lacI and rodent lacZ databases
Mutations at the human p53
and hprt genes; rodent transgenic lacI and lacZ mutations
database
summary
Human PAX2 Allelic
Variant Database
Human PAX6 Allelic
Variant Database
Human Type I and Type
III Collagen Mutation Database Dalgleish, R.
HUNT
Yudate, HT.
1, Suwa, M.
2, Irie, R.
1, Matsui,
H.
3, Nishikawa, T.
4, Nakamura, Y.
1, Yamaguchi,
D.
5, Zhang, Z.
1, Yamamoto, T.
1, Nagai,
K.
1, Hayashi, K.
1, Otsuki, T.
1, Sugiyama,
T.
1, Ota, T.
1, Suzuki, Y.
6, Sugano, S.
6,
Isogai, T.
1, Masuho, Y.
1
HvrBase
Radtke, A., Rupp, K., Voelpel, K., von Haeseler, A., Meyer, S.
iARC p53 Database
Compilation of TP53 gene
mutations (somatic and germline) identified by sequencing and published
in peer-reviewed articles.
database
summary
ICB
Identification and classification
of bacteria using protein-coding
database
summary
IDR
The ImmunoDeficiency Resource
(IDR), freely available at http://www.uta.fi/
database
summary
IMB Jena Image Library
of Biological Macromolecules Reichert, J., Suehnel,
J.
Visualization and analysis
of three-dimensional biopolymer structures
database
summary
IMGT
Lefranc, M.-P.
Immunoglobulin, T cell receptor,
and MHC sequences from human and other vertebrates
database
summary
IMGT/HLA
Robinson, J, Waller, MJ, Marsh, SGE
Imprinted Genes and
Parent-of-Origin Effects
InBase
Perler, F.B.
All known inteins (protein
splicing elements): properties, sequences, bibliography
database
summary
INE
Sakata, K.
1, Antonio, B. A.
1, Mukai, Y.
1,
Sakai, Y.
2, Makino, K.
2, Sasaki, T.
1
Integrated database for rice
genome analysis and sequencing
database
summary
Interferon Stimulated
Gene Database
InterPro
Apweiler, R.
1, Attwood, T.K.
2, Bairoch, A.
3,
Bateman, A.
4, Biswas, M
1, Bork, P
6, Bucher,
P.
5, Copley, R.
6, Croning, M.D.R.
1, Durbin,
R.
4, Falquet, L.
5, Fleischmann, W.
1, Gouzy,
J.
7, Griffiths-Jones, S.
4, Hermjakob, H.
1,
Hulo, N.
3, Jonassen, I.
8, Kahn, D.
7, Kanapin,
A.
1, Karavidopoulou, Y.
1, Lopez, R.
1,
Mulder, N.J.
1, Oinn, T.M.
1, Pagni, M.
5,
Ponting, C.P.
9, Servant, F.
1, Sigrist, C.J.A.
3,
Zdobnov, E.M.
1
Integrated documentation
resource for protein families, domains, and sites
database
summary
Intronerator
RNA splicing and gene structure
in C. elegans; alignments of C. briggsae and C. elegans genomic sequences
database
summary
iPROCLASS
Annotated protein classification
database with structure and function information
database
summary
JSNP
JSNP is a repository of Japanese
Single Nucleotide Polymorphism (SNP) data,
database
summary
KEYnet
Hierarchical list of gene
and protein names for data retrieval
database
summary
Kidney Development
Database
Kyoto Encyclopedia
of Genes and Genomes (KEGG)
LIGAND
Goto, S.
1, Okuno, Y.
1, Hattori, M.
1, Nishioka,
T.
2, Kanehisa, M.
1
LocusLink/RefSeq
Pruitt, K.D, Maglott, D.R.
Curated reference sequence
standards for genes, transcripts, and proteins
database
summary
MagnaportheDB
We have created a federated
database for genome studies of Magnaporthe gris
database
summary
MAtDB
MIPS Arabidopsis thaliana
Database: an integrated biological knowledge resource based on the first
complete plant genome
database
summary
Medicago Genome Initiative
(MGI) Waugh, M.
1, Anderson, W.
1,
Bell, C.
2, Inman, J.
1, Schilkey, F.
1,
Sullivan, J.
1, May, G.
3
Model legume Medicago ESTs,
gene expression and proteomic data
database
summary
Mendel Database
Database of plant EST and
STS sequences annotated with gene family information
database
summary
MEROPS
Rawlings,N.D., O'Brien,E.A., Barrett,A.J.
MetaCyc
Karp, P. D., Riley, M.
Metalloprotein Database
and Browser Castagnetto, J.M., Hennessy, S.W., Roberts,
V.A., Getzoff, E.D., Tainer, J.A., Pique, M.E.
MethDB
Grunau, C., Renault, E., Roizes, G.
MHC-Peptide Interaction
Database Ranganathan, S.
1, Govindarajan,
K.R.
1, Kangueane, P.
2, Tan, T.W.
1
MHCBN
Bhasin, M., Singh, H., Raghava, G. P. S.
MitBASE
Mitochondrial genomes, intra-species
variants, and mutants
database
summary
MitoNuc/MitoAln
Attimonelli, M.
1, Catalano, D.
1, Gissi, C.
2,
Grillo, G.
3, Licciulli, F.
1, Liuni, S.
3,
Pesole, G.
2, Saccone, C.
1
MMDB
All experimentally-determined
three-dimensional structures, linked to NCBI Entrez
database
summary
MODBASE
MODBASE (http://guitar.rockefeller.edu/modbase)
is a relational database of
database
summary
Mouse Atlas and Gene
Expression Database
Mouse Genome Database
(MGD) Blake, J.A., Eppig, J.T., Richardson, J.E.,
Bult, C.J., Kadin, J.A., Mouse Genome Database Group
Mouse Tumor Biology
Database (MTB) Bult, C.J., Krupke, D.M, Naf, D.,
Sundberg, J.P., Eppig, J.T.
Mouse tumor names, classification,
incidence, pathology, genetic factors
database
summary
MPDB
Marra, D.
1, Malusa, F.
1, Facchiano, A.
2,
Romano, P.
1
Information on synthetic
oligonucleotides proven useful as primers or probes
database
summary
Munich Information
Center for Protein Sequences (MIPS) Mewes, H. W.,
Warfsmann, J., Kolesov, G., Gueldener, U., Mannhaupt, G., Frishman, D.
Mutation Spectra Database
NCBI Taxonomy Browser
Names of all organisms that
are represented in the genetic databases with at least one nucleotide or
protein sequence
database
summary
NCL Mutations
Mutations and polymorphisms
in neuronal ceroid lipofuscinoses (NCL) genes
database
summary
Non-Canonical Interactions
in RNA Nagaswamy, U., Larios-Sanz, M., Hury, J.,
Collins, S., Zhang, Z., Zhao, Q., Fox, G. E.
Non-standard base-base interactions
in known RNA structures
database
summary
Nuclear Receptor Resource
Danielsen, M., Martinez, E.
NUREBASE
Duarte, J.
1, Perriere, G.
2, Laudet, V.
1,
Robinson-Rechavi, M.
1
Olfactory Receptor
Database
Online Mendelian Inheritance
in Man
Oral Cancer Gene Database
Cellular, molecular, and
biological data for genes involved in oral cancer
database
summary
Oryzabase
Yamazaki, Y.
1, Yoshimura, A.
3, Nagato, Y.
2,
Yamakawa, T.
1, Kurata, N.
4
PALI
Balaji, S.
1, Sujatha, S.
1, Aruna, S.
2,
Mhatre, S.N.
1, Srinivasan, N.
1
PALS db
PALS db is a collection of
Putative Alternative Splicing information from 1
database
summary
PASS2
Mallika, V., Bhaduri, A., Sowdhamini, R.
PathDB
Kuffner, R.M., Gonzales, M., Steadman, P., Wlodek, D.K., Jankowitz, R.J.,
Boinoff, J.R., MontoyA, L., Peterson, T.F., Bulmore, D.L., Blanchad, J.B.
PDB
Structure data determined
by X-ray crystallography and NMR
database
summary
PDB-REPRDB
Noguchi, T.
1, Mikoshiba, M.
2, Takahashi, A.
2,
Akiyama, Y.
1
PEDB
Sequences from prostate tissue
and cell type-specific cDNA libraries
database
summary
Pfam
Multiple sequence alignments
and hidden Markov models of common protein domains
database
summary
PharmGKB
The Pharmacogenetics Knowledge
Base (PharmGKB; http://www.pharmgkb.org/) co
database
summary
PKR
Protein kinase sequences,
enzymology, genetics, and molecular and structural properties.
database
summary
PLANT-PIs
De Leo F.
1, Volpicella M.
1, Licciulli F.
2,
Liuni S.
3, Gallerani R.
1, Ceci L.R.
3
PlantCARE
Lescot, M.
3, Dehais, P.
1, Moreau, Y.
3,
Van de Peer, Y.
1, Rouze, P.
2, Rombauts, S.
1
PLANTncRNAs
MacIntosh, G.C.
1, Macalincag, M-C.P.
1, Green, P.J.
2
Plant non-protein coding
RNAs with relevant gene expression information
database
summary
PlantsP
Gribskov, M.
1, Chan, C.W.
8, Fana, F.
1,
Harmon, A.C.
4, Harper, J.
3, Hrabak, E.
6,
Schaller, G.E.
7, Smith, D.W.
2, Tax, F.E.
5,
Zhang, G.
2
PlasmoDB
Bahl, A.
1, Brunk, B.
2, Coppel, R. L.
3,
Crabtree, J.
2, Diskin, S. J.
2, Fraunholz, M. J.
1,
Grant, G. R.
2, Gupta, D.
1, Huestis, R. L.
3,
Kissinger, J. C.
1, Labo, P.
1, Li, L.
1,
McWeeney, S. K.
2, Milgram, A. J.
1, Roos, D. S.
1,
Schug, J.
2, Stoeckert, C. J. Jr.
2
PLMItRNA
Mitochondrial tRNA genes
and molecules in photosynthetic eukaryotes
database
summary
PPMdb
Arabidopsis plasma membrane
protein sequence and expression data
database
summary
Predictome
The current deluge of genomic
sequences has spawned the creation of tools c
database
summary
PRESAGE
Smith, A.
1, Barken, D.
1, Levitt, M.
2,
Brenner, S. E.
1
Protein structures with experimental
and predictive annotations
database
summary
PRINTS
Attwood, T.K
1, Blythe, M.J.
3, Flower, D.R.
3,
Gaulton, A.
1, Mabey, J.E.
1, Maudling, N.
1,
McGregor, L.
4, Mitchell, A.
2, Moulton, G.
1,
Paine, K.
3, Scordis, P.
1
ProClass
Protein families defined
by PIR superfamilies and PROSITE patterns
database
summary
ProDom
Kahn D., Courcelle E., Gouzy J.
PromEC
E. coli mRNA promoters with
experimentally identified transcriptional start sites
database
summary
PROSITE
Falquet, L.
1, Pagni, M.
1, Bucher, P.
2,
Bairoch, A.
3, Hulo, N.
3, Sigrist, C.J.A.
3,
Hofmann, K.
4
Protein Information
Resource (PIR)
Comprehensive, annotated,
non-redundant protein sequence database
database
summary
Proteome Analysis
Database Apweiler, R.
1, Biswas, M.
1,
Fleischmann, W.
1, Kanapin, A.
1, Karavidopoulou, Y.
1,
Kersey, P.
1, Kriventseva, E.V.
1, Mittard, V.
1,
Mulder, N.
1, Phan, I.
2, Servant, F.
1,
Zdobnov, E.
1
Online application of InterPro
and cluSTr for the functional classification of proteins in whole genomes
database
summary
Proteome BioKnowledge
Library Costanzo, M.C., Arnaud, M.B., Csank, C.J.,
Hirschman, J.E., Kranz, J.E., Olsen, P., Robertson, L.S., Skrzypek, M.S.,
Kondu, P., Lengieza, C., Tillberg, M., Garrels, J.I.
ProtoMap
Automated hierarchical classification
of SWISS-PROT proteins
database
summary
PseudoBase
Batenburg,F.H.D.van
1, Gultyaev,A.P.
1, Pleij,C.W.A.
2
Structural, functional and
sequence data related to RNA pseudoknots
database
summary
Rat Genome Database
Twigger, S.N.
1, Lu, J.
1, Shimoyama, M.
1,
Chen, D.
1, Pasko, D.
1, Long, H.
1, Ginster,
J.
1, Chen, C.
1, Nigam, R.
1, Kwitek-Black,
A.E.
2, Eppig, J.T.
3, Maltais, L.
3, Maglott,
D.
4, Schuler, G.
4, Jacob, H.J.
2, Tonellato,
P.
1
RB1 Gene Mutation
Database
READ
READ, the RIKEN Expression
Array Database, is a database of expression prof
database
summary
RECODE
Genes using programmed translational
recoding in their expression
database
summary
RegulonDB
E. coli transcriptional regulation
and operon organization
database
summary
Ribosomal Database
Project (RDP-II) Cole,J.R.
1, Lilburn,T.G.
1,
Saxman,P.R.
1, Maidak,B.L.
1, Parker,C.T.
1,
Chandra,S.
1, Farris,R.J.
1, Garrity,G.M.
2,
Schmidt,T.M.
2, Tiedje,J.M.
2
Ribosomal Differentiation
of Medical Microorganisms (RIDOM) Harmsen, D.
1,
Rothg?nger, J.
2, Frosch, M.
1, Albert, J.
2
rRNA (16S and ITS) sequence-based
identification of medical microorganisms
database
summary
RiceGAAS
An automated annotation system
and database for rice genome sequence
database
summary
RNA Modification Database
RSDB
J. T. Horng
1, H. D. Horng
2, F. M. Lin
2,
L. W. Lu
2, J. H. Lin
2, H. C. chang
2, T.
T. Weng
4, C. Y. Kao
3
rSNP Guide
Single nucleotide polymorphisms
in regulatory gene regions
database
summary
S/MARt DB
S/MARt DB, the S/MAR transaction
database, is a relational database coverin
database
summary
Saccharomyces Genome
Database (SGD)
SBASE
Vlahovicek, K.
1, Murvai, J.
1, Barta, E.
2,
Pongor, S.
1
SCOP
Lo Conte, L.
1, Brenner, S.E.
2, Hubbard, T.J.P.
3,
Chothia, C.
1, Murzin, A.G.
4
SCOR
Klosterman, P. S.
1, Holbrook, S. R.
2, Brenner, S.
E.
1
Small RNA Database
Direct sequencing of small
RNA sequences from prokaryotes and eukaryotes
database
summary
SMART
Letunic, I.
1, Goodstadt, L.
2, Dickens, NJ.
2,
Doerks, T.
1, Schultz, J.
3, Ciccarelli, F.
1,
Copley, RR.
1, Ponting, CP.
2, Bork, P.
1
SRPDB
Samuelsson, T.
1, Zwieb, C.
2
Signal recognition particle
RNA, SRP protein, and SRP receptor sequences and alignments
database
summary
Stanford Microarray
Database Ball, C.A., Binkley, G., Gollub, J., Hernandez-Boussard,
T., Jin, H., Kaloper, M., Matese, J.C., Brown, P.O., Botstein, D., Sherlock,
G.
SubtiList
Moszer, I.
1, Jones, L.M.
2, Moreira, S.
1,
Fabry, C.
1, Danchin, A.
3
SUPERFAMILY
Gough, J., Chothia, C.
SUPFAM
Pandit, S.B.
1, Gosar, D.
1, Abhiman, S.
2,
Sujatha, S.
1, Dixit, S.S.
3, Mhatre, N.S.
1,
Sowdhamini, R.
2, Srinivasan, N.
1
SV40 Large T-Antigen
Mutant Database
SWEET-DB
Loþ, Alex
1, Bunsmann. P.
1, Bohne, A.
4,
Loþ, Annika
1, Schwarzer, E.
1, Lang, E.
3,
von der Lieth, C.-W.
4
Annotated carbohydrate structure
and substance information
database
summary
SWISS-2DPAGE
Annotated two-dimensional
polyacrylamide gel electrophoresis database
database
summary
SYSTERS, GeneNest,
SpliceNest Krause, A., Haas, S.A., Coward, E., Vingron,
M.
Integrated database of protein
families, EST clusters and their genomic positions
database
summary
The Arabidopsis Information
Resource (TAIR)
The HugeIndex: Human
Gene Expression Index Haverty, P.
1, Weng,
Z.
2, Best, N.
3, Auerback, K.
3, Hsiao,
L.
3, Jensen, R.
4, Gullans, S.
3
The Phytophthora Genome
Consortium Database Waugh, M.E.
1, Tyler,
B.M.
2, Mitchell, T.
3, Houfek, T.D.
3, Dean,
R.A.
3, Anderson, W.T.
1, Inman, J.T.
1,
Schilkey, F.D.
1, Sullivan, J.P.
1, Bell, C.J.
4
Therapeutic Target
Database
A number of proteins and
nucleic acids have been explored as therapeutic ta
database
summary
TIGRFAMs
Protein family resource for
the functional identification of proteins
database
summary
tmRDB
Wower, J.
1, Knudsen, B.
2, Gorodkin, J.
2,
Zwieb, C.
3
Tooth Development
Database
TRANSCompel
A database on composite regulatory
elements in eukaryotic genes
database
summary
Transgenic/Targeted
Mutation Database
Transterm
Jacobs, G.
2, Rackham, O.
1, Stockwell, P. A.
1,
Brown, C. M.
1
trEST, trGEN, Hits
Pagni, M.
1, Falquet, L.
1, Iseli, C.
2,
Jongeneel, V.
2, Junier, T.
3, Bucher, P.
3
trEST and trGEN are two databases
of hypothetical protein sequences. Hits is a pre-compiled list of domains/signatures
predicted on them.
database
summary
TRIPLES
Kumar, A.
1, Cheung, K.-H.
2, Tosches, N.
2,
Masiar, P.
2, Liu, Y.
2, Miller, P.
2, Snyder,
M.
1
TRansposon-Insertion Phenotypes,
Localization, and Expression in Saccharomyces
database
summary
Tumor Gene Family
Databases (TGDBs)
Cellular, molecular, and
biological data about genes involved in various cancers
database
summary
UM-BBD
Ellis, L.B.M., Wackett, L.P.
Microbial biocatalytic reactions
and biodegradation pathways
database
summary
UTRdb/UTRsite
Pesole, G.
1, Liuni, S.
2, Grillo, G.
2,
Licciulli, F.
3, Mignone, F.
1, Gissi, C.
1,
Saccone, C.
3
5' and 3' UTRs of eukaryotic
mRNAs and relevant functional patterns
database
summary
Vectordb
Characterization and classification
of nucleic acid vectors
database
summary
VIDA
Albà, M.M.
1, Holzerlandt, R.
1, Myers, R.E.
1,
Shepherd, A.J.
2, Lee, D.
2, Martin, N.
3,
Orengo, C.A.
2, Kellam, P.
1
Viroids and viroid-like
RNAs
VirOligo
Onodera, K., Melcher, U.
Wanda
Comparative genomics has
shown that ray-finned fish (Actinopterygii) contai
database
summary
WILMA
Prlic, A., Domingues, F.S., Lackner, P., Sippl, M.J.
WIT2
Integrated system for functional
curation and development of metabolic models
database
summary
XREFdb
Cross-referencing of model
organism genetics with mammalian phenotypes
database
summary
yMGV
yMGV (yeast Microarray Global
Viewer) was designed to provide biologists wi
database
summary
YPL.db
The Yeast Protein Localization
Database (YPL.db) contains information about
database
summary
ZFIN
Sprague, J., Douglas, S., Westerfield, M., The ZFIN GROUP (Clements, D.,
Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E.)
