NAR Database Issue

Blocks Henikoff, J.G.¹, Pietrokovski, S.³, Greene, E.A.¹, Ng, P.C.¹, Henikoff, S.²

Multiple alignments of conserved regions of protein families
database summary

CDD Marchler-Bauer, A., Panchenko, A.R., Shoemaker, B.A., Thiessen, P.A., Geer, L.Y., Bryant, S.H.

Alignment models for conserved protein domains
database summary

CluSTr Kriventseva, E.V., Servant, F., Fleischmann, W., Zdobnov, E.V., Apweiler, R.

Automatic classification of SWISS-PROT+TrEMBL proteins
database summary

eMOTIF

Protein sequence motif determination and searches
database summary

InterPro Apweiler, R.¹, Attwood, T.K.², Bairoch, A.³, Bateman, A.⁴, Biswas, M¹, Bork, P⁶, Bucher, P.⁵, Copley, R.⁶, Croning, M.D.R.¹, Durbin, R.⁴, Falquet, L.⁵, Fleischmann, W.¹, Gouzy, J.⁷, Griffiths-Jones, S.⁴, Hermjakob, H.¹, Hulo, N.³, Jonassen, I.⁸, Kahn, D.⁷, Kanapin, A.¹, Karavidopoulou, Y.¹, Lopez, R.¹, Mulder, N.J.¹, Oinn, T.M.¹, Pagni, M.⁵, Ponting, C.P.⁹, Servant, F.¹, Sigrist, C.J.A.³, Zdobnov, E.M.¹

Integrated documentation resource for protein families, domains, and sites
database summary

iPROCLASS

Annotated protein classification database with structure and function information
database summary

O-GLYCBASE

Glycoproteins and O-linked glycosylation sites
database summary

Pfam

Multiple sequence alignments and hidden Markov models of common protein domains
database summary

PIR-ALN

Protein sequence alignments
database summary

PRINTS Attwood, T.K¹, Blythe, M.J.³, Flower, D.R.³, Gaulton, A.¹, Mabey, J.E.¹, Maudling, N.¹, McGregor, L.⁴, Mitchell, A.², Moulton, G.¹, Paine, K.³, Scordis, P.¹

Hierarchical gene family fingerprints
database summary

ProClass

Protein families defined by PIR superfamilies and PROSITE patterns
database summary

ProDom Kahn D., Courcelle E., Gouzy J.

Protein domain families
database summary

PROSITE Falquet, L.¹, Pagni, M.¹, Bucher, P.², Bairoch, A.³, Hulo, N.³, Sigrist, C.J.A.³, Hofmann, K.⁴

Biologically-significant protein patterns and profiles
database summary

ProtoMap

Automated hierarchical classification of SWISS-PROT proteins
database summary

SBASE Vlahovicek, K.¹, Murvai, J.¹, Barta, E.², Pongor, S.¹

Annotated protein domain sequences
database summary

SMART Letunic, I.¹, Goodstadt, L.², Dickens, NJ.², Doerks, T.¹, Schultz, J.³, Ciccarelli, F.¹, Copley, RR.¹, Ponting, CP.², Bork, P.¹

Simple Modular Architecture Research Tool
database summary

SUPFAM Pandit, S.B.¹, Gosar, D.¹, Abhiman, S.², Sujatha, S.¹, Dixit, S.S.³, Mhatre, N.S.¹, Sowdhamini, R.², Srinivasan, N.¹

Sequence families correlated to structure
database summary

SYSTERS, GeneNest, SpliceNest Krause, A., Haas, S.A., Coward, E., Vingron, M.

Integrated database of protein families, EST clusters and their genomic positions
database summary

Database Category: Protein Sequence Motifs