NAR Database Issue

16S and 23S Ribosomal RNA Mutation Database Triman, K.L, Vavoulis, S.T.

16S and 23S ribosomal RNA mutations
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5S Ribosomal RNA Database

5S rRNA sequences
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ACTIVITY

Functional DNA/RNA site activity
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ARED

AU-rich element-containing mRNAs
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Collection of mRNA-like Noncoding RNAs

Non-protein-coding RNA transcripts
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European Large Subunit Ribosomal RNA Database Wuyts, J.¹, Van de Peer, Y.², Winkelmans, T.¹, De Wachter, R.¹

Alignment of large subunit ribosomal RNA sequences with secondary structure information
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European Small Subunit Ribosomal RNA Database Wuyts, J.¹, Van de Peer, Y.², Winkelmans, T.¹, De Wachter, R.¹

Alignment of small subunit ribosomal RNA sequences with secondary structure information
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Guide RNA Database

Guide RNA sequences
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HyPaLib

Structural elements characteristic for classes of RNA
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Intronerator

RNA splicing and gene structure in C. elegans; alignments of C. briggsae and C. elegans genomic sequences
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Non-Canonical Interactions in RNA Nagaswamy, U., Larios-Sanz, M., Hury, J., Collins, S., Zhang, Z., Zhao, Q., Fox, G. E.

Non-standard base-base interactions in known RNA structures
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PLANTncRNAs MacIntosh, G.C.¹, Macalincag, M-C.P.¹, Green, P.J.²

Plant non-protein coding RNAs with relevant gene expression information
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PLMItRNA

Mitochondrial tRNA genes and molecules in photosynthetic eukaryotes
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PseudoBase Batenburg,F.H.D.van¹, Gultyaev,A.P.¹, Pleij,C.W.A.²

Structural, functional and sequence data related to RNA pseudoknots
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Ribosomal Database Project (RDP-II) Cole,J.R.¹, Lilburn,T.G.¹, Saxman,P.R.¹, Maidak,B.L.¹, Parker,C.T.¹, Chandra,S.¹, Farris,R.J.¹, Garrity,G.M.², Schmidt,T.M.², Tiedje,J.M.²

rRNA sequence data, alignments, and phylogenies
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RISCC

Ribosomal 16S-23S RNA gene spacer regions
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RNA Modification Database

Naturally modified nucleosides in RNA
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SELEXdb

Selected DNA/RNA functional site sequences
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Small RNA Database

Direct sequencing of small RNA sequences from prokaryotes and eukaryotes
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SRPDB Samuelsson, T.¹, Zwieb, C.²

Signal recognition particle RNA, SRP protein, and SRP receptor sequences and alignments
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The tmRNA Website

tmRNA sequences, foldings, and alignments
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tmRDB Wower, J.¹, Knudsen, B.², Gorodkin, J.², Zwieb, C.³

tmRNA (10Sa RNA) sequences and alignments
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tRNA Sequences

tRNA and tRNA gene sequences
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UTRdb/UTRsite Pesole, G.¹, Liuni, S.², Grillo, G.², Licciulli, F.³, Mignone, F.¹, Gissi, C.¹, Saccone, C.³

5' and 3' UTRs of eukaryotic mRNAs and relevant functional patterns
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Viroids and viroid-like RNAs

Viroids and viroid-like RNAs
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Yeast snoRNA Database

Yeast small nucleolar RNAs
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Database Category: RNA Sequences